Issues
- 1
gff_stream breaks with comments
#61 opened by iankorf - 0
weighted training
#60 opened by iankorf - 0
frame check on shared cds
#59 opened by iankorf - 0
duplicate/overlapping
#58 opened by iankorf - 0
Review all docstrings
#30 opened by iankorf - 2
- 0
Consistent whitespace
#31 opened by iankorf - 0
appropriate comments
#35 opened by iankorf - 0
hmm unit tests
#37 opened by iankorf - 0
genome unit tests
#38 opened by iankorf - 1
feature unit tests
#39 opened by iankorf - 0
sequence unit tests
#34 opened by iankorf - 0
io unit tests
#36 opened by iankorf - 0
toolbox unit tests
#33 opened by iankorf - 4
programs don't have unit tests
#28 opened by iankorf - 0
kandi - more view shortcuts
#56 opened by iankorf - 0
kandi - cursor navigation
#55 opened by iankorf - 0
kandi - show translation in 1 bp view
#53 opened by iankorf - 0
kandi - canonical signals and issues
#57 opened by iankorf - 0
kandi - better symbols and colors
#54 opened by iankorf - 0
kandi - reverse-compliment
#52 opened by iankorf - 2
- 0
- 0
- 0
- 0
feature_table unit tests
#40 opened by iankorf - 0
- 0
- 0
- 0
- 1
- 0
- 0
Rename programs
#32 opened by iankorf - 0
- 0
HMM doesn't specify alphabet
#19 opened by iankorf - 1
HMM needs explicit durations
#22 opened by iankorf - 0
investigate cython for decoding speedups
#29 opened by iankorf - 1
Threading...
#26 opened by iankorf - 1
fathom: genomes with lots of scaffolds
#13 opened by iankorf - 1
Genome needs to read via FASTA_stream
#27 opened by iankorf - 0
Doc strings needed
#23 opened by iankorf - 2
gzipped files
#24 opened by iankorf - 0
gff3r.py needs additional sources
#12 opened by iankorf - 0
GTF reader
#25 opened by iankorf - 1
Calculate 5'UTR and 3'UTR instead of read
#20 opened by iankorf - 8
random_seq doesn't follow our standards
#18 opened by iankorf - 3
chromosome map
#21 opened by iankorf - 3
Program request: HMM grapher
#16 opened by iankorf - 1
tests.py needs more tests
#14 opened by iankorf - 6
Proper packaging
#15 opened by iankorf