Pinned Repositories
Assemblathon
Code that was used in the Assemblathon 1 and 2 projects
CEGMA_v2
The final version 2 release of our software to detect core genes in eukaryotic genomes
Centromere_repeat_paper
Code used to generate data for our analysis of centromeric repeats
imeter
2022 reboot of IME project
Perl_utils
Miscellaneous Perl scripts and modules used by people in the Korf lab
Rosalind
Solutions to Rosalind problems
setup
How to set up your work environment
SNAP
Gene prediction software
StochHMM
A Hidden Markov Model Application and C++ Library for Rapid and Flexible Development of HMMs
unix_and_perl
The Korf Lab's Repositories
KorfLab/StochHMM
A Hidden Markov Model Application and C++ Library for Rapid and Flexible Development of HMMs
KorfLab/SNAP
Gene prediction software
KorfLab/grimoire
Biological sequence analysis tools
KorfLab/imeter
2022 reboot of IME project
KorfLab/setup
How to set up your work environment
KorfLab/algorithms
KorfLab/genomikon
Genomic sequence analysis library & apps
KorfLab/learning-snakemake
KorfLab/spitfire
KorfLab/diseasy
KorfLab/genDL
Genomic experiments in Deep Learning
KorfLab/korflab.github.io
KorfLab/learning-C
KorfLab/learning-conda
KorfLab/learning-go
KorfLab/boggleome
A fun algorithmic challenge
KorfLab/datacore2024
KorfLab/documenation
Testing various documentation systems
KorfLab/exam
Bioinformatics Exam
KorfLab/isoforms
KorfLab/lyman2020
Custom scripts for Lyman et al (2020)
KorfLab/malign
KorfLab/monsters
Sources, data, and figures for Zhang & Korf 2022
KorfLab/motifamatic
KorfLab/pelops
Probabilistic Evaluation of Local Oligo Patterns in Sequences
KorfLab/qalpha
Quality Assessment using Alpha Fold DB
KorfLab/seqxtant
Genomic positioning of related sequences
KorfLab/u12
KorfLab/viterbi
A programming challenge for fun!
KorfLab/whichlanguage
Some languages are better tuned for certain tasks. But which ones and for which tasks?