Kwondo87
I'm a postdoc in Jackson Laboratory for Genomic Medicine My research interests: Bioinformatics, Evolutionary genomics
Kwondo87's Stars
splicebox/eXAlu
Deep learning prediction of Alu exonization events
galantelab/fredy
Tool to identify chimeric events from RNA-Seq data
splicebox/Alubaster
Detection of novel Alu exonization events from RNA-seq data
bcgsc/LINKS
⛓ Long Interval Nucleotide K-mer Scaffolder
alexdobin/STAR
RNA-seq aligner
pgrady1322/T2T-Polish
Fully automatic k-mer based polishing for genome assemblies
lbcb-sci/herro
HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of >= 10 kbps is recommended).
BGI-Qingdao/TGS-GapCloser2
A gap-closing software tool that uses long reads to enhance genome assembly.
ArimaGenomics/mapping_pipeline
Mapping pipeline for data generated using Arima-HiC
c-zhou/yahs
Yet another Hi-C scaffolding tool
DyogenIBENS/FINSURF
FINSURF is a tool designed to analyse lists of sequences variants in the human genome.
tprodanov/locityper
Targeted genotyper for complex polymorphic genes
CshlSiepelLab/LINSIGHT
PacificBiosciences/HiFiCNV
Copy number variant caller and depth visualization utility for PacBio HiFi reads
PacificBiosciences/HiPhase
Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
PacificBiosciences/MethBat
A battery of methylation tools for PacBio HiFi reads
benoukraflab/NanoVar
Structural variant caller for low-depth long-read sequencing data
eldariont/svim
Structural Variant Identification Method using Long Reads
tjiangHIT/cuteSV
Long read based human genomic structural variation detection with cuteSV
mroosmalen/nanosv
SV caller for nanopore data
fritzsedlazeck/Sniffles
Structural variation caller using third generation sequencing
PacificBiosciences/pbsv
pbsv - PacBio structural variant (SV) calling and analysis tools
nextgenusfs/funannotate
Eukaryotic Genome Annotation Pipeline
groupschoof/AHRD
High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.
Gaius-Augustus/TSEBRA
TSEBRA: Transcript Selector for BRAKER
Gaius-Augustus/BRAKER
BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes
Dfam-consortium/TETools
Dfam Transposable Element Tools Docker container.
informationsea/transanno
accurate LiftOver tool for new genome assemblies
mahulchak/mito-finder
Assembling mitochondrial genomes from long molecule sequences
linzhi2013/MitoZ
MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes