LUMC/rna_cd

Detect RNA contamination in human Illumina DNA-seq experiments

RNA Contamination Detector

rna_cd is a python package and command line tool designed to detect RNA contamination of DNA-seq experiments.

For our complete documentation, please checkout our readthedocs page.

Requirements

• Python 3.5+
• click
• scikit-learn
• pysam
• matplotlib

Installation

PyPI

$ pip install rna-cd

Conda

::

$ conda install -c bioconda rna-cd

License

AGPLv3+