dna-seq

There are 20 repositories under dna-seq topic.

  • Phillip-a-richmond/GenomeAnalysisModule

    Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees in the UBC MSc Genetic Counselling Training Program, as they embark on a journey to learn about analyzing genomes.

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  • fhidalgor/mutagenesis_visualization

    Software for the analysis and visualization of site-saturation mutagenesis experiments

    Language:Python16172

  • luuloi/AppliedBioinformatics2023

    "Applied bioinformatics" is a course for Genetics Master Program at Genetics Department

    Language:R10205

  • yhoogstrate/bam-lorenz-coverage

    Generate Lorenz plots and Coverage plots directly from BAM files

    Language:Python9240
  • cutseq

    y9c/cutseq

    ✂️ Trim sequencing adapters from NGS data automatically

    Language:Python6100

  • icgc-argo-workflows/dna-seq-processing-wfs

    ICGC ARGO DNA-Seq Processing Workflow

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  • skchronicles/Docker

    Collection of Dockerfiles for bioinformatics tools

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  • LUMC/rna_cd

    Detect RNA contamination in human Illumina DNA-seq experiments

    Language:Python231

  • sandialabs/CasCollect

    A pipeline for the detection of Cas genes and CRISPR arrays from unassembled raw illumina sequencing reads

    Language:Python234

  • clbenoit/CutOneStrand

    This tool is designed to scan all positions on a gene than can be used to specifically cut one DNA strand using a given cas9.

    Language:Shell1000

  • clbenoit/filt3r.shiny

    R Shiny app encapsulating FilLT3r tool : https://doi.org/10.1186/s12859-022-04983-6

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  • Marcrockhat/imprintia

    This is a repository for a pipeline used to identify imprinted genes or allele specific expressions using Illumina next generation sequencing (NGS) platform. This repository contains a work in progress to identify imprinted genes in polyploid species.

    Language:R1100

  • rouni001/CLARK

    CLARK: Fast, accurate and versatile sequence classification system

    Language:C++1100

  • clbenoit/GermlineVarDB

    R Shiny app for germline genomic variants interpretation. The tool suite to deal with the underlying local structured database is provided here : https://github.com/clbenoit/GermlineVarDBTools

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  • clbenoit/SomaVarDB

    R Shiny app for somatic genomic variants interpretation. The tool suite to deal with the underlying local structured database is provided here : https://github.com/clbenoit/SomaVarDBTools

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  • Lukas0025/sdcsim

    Strand Displacement Cascades simulator

    Language:C++0100

  • qiyoyou/DNA-seq

    DNA-seq Data process (example from real case)

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  • rodriguez-salarichs/vecscreen_extract

    Program extracts a valuable information from an output vecscreen file

    Language:Roff0100

  • YuqiZ2020/Coursera-DNA-Seq

    Homework submissions and copies of notebooks used in the practical sessions for Algorithms for DNA Sequencing

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  • wckdouglas/liftover_bam

    Language:Python10