Pinned Repositories
AmpUMI
Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)
awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
bcr-tcr-workflows
Workflows for repertoires based on Snakemake or CWL
blog_django
BMFtools
Barcoded Molecular Families
ChIP-seq-analysis
ChIP-seq analysis notes from Tommy Tang
ClinicalGradeDNAseq
Automated next generation DNA sequencing analysis pipeline suited for clinical tests, with >99.9% sensitivity to Sanger sequencing at read-depth>18
cnki-downloader
知网(CNKI)文献下载工具
CompleteTCR
Repertoire determination from RNAseq of paired TCR chains
Reseqtools
A Toolkit for analyzing next-generation DNA Re-Sequencing data
LeanGreen's Repositories
LeanGreen/AmpUMI
Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)
LeanGreen/awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
LeanGreen/bcr-tcr-workflows
Workflows for repertoires based on Snakemake or CWL
LeanGreen/BMFtools
Barcoded Molecular Families
LeanGreen/ChIP-seq-analysis
ChIP-seq analysis notes from Tommy Tang
LeanGreen/ClinicalGradeDNAseq
Automated next generation DNA sequencing analysis pipeline suited for clinical tests, with >99.9% sensitivity to Sanger sequencing at read-depth>18
LeanGreen/cpipe
The open source version of the Melbourne Genomics Health Alliance Exome Sequencing Pipeline
LeanGreen/django-intro-zh
Chinese version of Django document intro part.
LeanGreen/fastp
A FASTQ preprocessor with full features (QC/adapters/trimming/filtering/splitting...)
LeanGreen/FDSP
FDSP, a pipeline to identify novel susceptibility loci for complex diseases based on the interpretation of the functional features for known disease-associated variants with machine learning.
LeanGreen/hosts
:statue_of_liberty:最新可用的google hosts文件。镜像：
LeanGreen/ImmunoMap
Structural TCR Repertoire Analytics Package
LeanGreen/IMonitor
This script use to analyze the immune repertoire sequenced by high throughtput sequencing
LeanGreen/ITIS
tool to Identify TE Insertion Sites in genome
LeanGreen/LeanGreen.github.io
LeanGreen/mageri
MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers
LeanGreen/nf-GATK_Exome_Preprocess
Adapted from the GATK best practice guide to preprocess whole exome sequencing (WES) data
LeanGreen/ngs_pipeline
Exome/Capture/RNASeq Pipeline Implementation using snakemake
LeanGreen/pVAC-Seq
A cancer immunotherapy pipeline
LeanGreen/radmixture
an R package for ancestry analysis
LeanGreen/RNA-seq-analysis
RNAseq analysis notes from Tommy Tang
LeanGreen/rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
LeanGreen/RTCR
A pipeline for complete and accurate recovery of TCR repertoires from high throughput sequencing data.
LeanGreen/snakefiles
:snake: Snakefiles for common RNA-seq data analysis workflows.
LeanGreen/STARTRAC
STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
LeanGreen/tcr
tcR: an R package for immune receptor repertoire advanced data analysis.
LeanGreen/tcr-dist
Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)
LeanGreen/TCR-from-RNAseq2015
Code associated with Brown, Raeburn, and Holt, Profiling tissue-resident T cell repertoires by RNA sequencing, Genome Medicine 2015
LeanGreen/UMI-analysis
Scripts for processing Illumina sequence data containing unique molecular identifiers (UMI)
LeanGreen/umitools
Tools to handle reads sequenced with unique molecular identifiers (UMIs).