Pinned Repositories
AmpUMI
Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)
awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
bcr-tcr-workflows
Workflows for repertoires based on Snakemake or CWL
blog_django
BMFtools
Barcoded Molecular Families
ChIP-seq-analysis
ChIP-seq analysis notes from Tommy Tang
ClinicalGradeDNAseq
Automated next generation DNA sequencing analysis pipeline suited for clinical tests, with >99.9% sensitivity to Sanger sequencing at read-depth>18
cnki-downloader
知网(CNKI)文献下载工具
CompleteTCR
Repertoire determination from RNAseq of paired TCR chains
Reseqtools
A Toolkit for analyzing next-generation DNA Re-Sequencing data
LeanGreen's Repositories
LeanGreen/Reseqtools
A Toolkit for analyzing next-generation DNA Re-Sequencing data
LeanGreen/blog_django
LeanGreen/cnki-downloader
知网(CNKI)文献下载工具
LeanGreen/CompleteTCR
Repertoire determination from RNAseq of paired TCR chains
LeanGreen/Decombinator
Decombinator version 3, for error-correcting analysis of TCR repertoires
LeanGreen/Hello-World
My Beginning
LeanGreen/hexo-theme-pln
Plain theme for Hexo. http://gaoryrt.com
LeanGreen/hexo-theme-simpleblock
Hexo theme of jysperm's blog.
LeanGreen/hexo-theme-smackdown
hexo-theme-smackdown DEMO:
LeanGreen/hexo-theme-yilia
一个简洁优雅的hexo主题 ; A simple and elegant theme for hexo.
LeanGreen/IonTorrent-VariantCaller
LeanGreen/Kfstorm.DoubanFM.Core
A .NET client library for douban.fm
LeanGreen/LandsBlog
Rss&Blog——Django项目
LeanGreen/maupassant
A simple typecho template.
LeanGreen/py.BIO
LeanGreen/rna-seq-diff-exprn
RNA-Sequencing data differential expression analysis pipeline. Performs: genome coverage (via bedtools and HTSeq), generates Circos code and plots, differential expression (via DESeq and NOISeq), structural variant detection (e.g. fusion genes, via SVDetect) and differential exon usage (via DEXSeq).
LeanGreen/scTCRseq
Processing of single cell RNAseq data for the recovery of TCRs in python
LeanGreen/TCR-1
Web-application for T cell receptors' repertoires analyzing
LeanGreen/TCR-2
A pipe for extracting TCRs from RNAseq data.
LeanGreen/tcR-3
:exclamation: This is a read-only mirror of the CRAN R package repository. tcR — Advanced Data Analysis of Immune Receptor Repertoires. Homepage: http://imminfo.github.io/tcr/ Report bugs for this package: https://github.com/imminfo/tcr/issues
LeanGreen/tcr-analysis
Scripts and files that I use to analyse T cell receptor repertoire data, produced by deep-sequencing
LeanGreen/TCRclust
A collection of scripts used for tracking T-cell expansions using HTS
LeanGreen/VarScan
Cloned from https://sourceforge.net/projects/varscan, with possible improvement