Leandroscholz
ChemE, Bioimage Analyst and PhD Candidate at the University of Queensland, Ethan Scott's Lab
University of QueenslandBrisbane, Australia
Pinned Repositories
AerialHyphae_DLB
Python implementation of the mycelial growth model for Aerial hyphae from Coradin et al., Biochem. Eng. J. 54(3) 2011.
BIA-ML-studies
repository with material I use as I am learning more of bioimage analysis and machine learning
biotoolsDocs
Documentation for bio.tools and related community projects
biotoolsSchemaDocs
Documentation for biotoolsSchema
bise-documents
This directry host documents under construction, which aims to be then inserted either in BISE itself, either on the wiki
edam-bioimaging
Bioimaging operations, data types, formats, identifiers and topics. EDAM-Bioimaging is an extension to the EDAM ontology (edamontology.org) for bioimaging, developed in collaboration with partners from NEUBIAS (neubias.org).
gxl2swc
repository that shows the learning curve and the final result of a python script that reads a gxl file and converts into .swc format
Hypha_WMTS
Implementations of the hyphal growth model of Balmant et al., PLoS One, 10(3), 2015.
swc_metrics
set of filament tracing metric computation utilities (for .swc files)
swc_node_sorter
gets .swc files and sort its node list correctly in order to be accepted by DiademMetric.jar for score calculation
Leandroscholz's Repositories
Leandroscholz/BIA-ML-studies
repository with material I use as I am learning more of bioimage analysis and machine learning
Leandroscholz/biotoolsDocs
Documentation for bio.tools and related community projects
Leandroscholz/bise-documents
This directry host documents under construction, which aims to be then inserted either in BISE itself, either on the wiki
Leandroscholz/edam-bioimaging
Bioimaging operations, data types, formats, identifiers and topics. EDAM-Bioimaging is an extension to the EDAM ontology (edamontology.org) for bioimaging, developed in collaboration with partners from NEUBIAS (neubias.org).
Leandroscholz/Hypha_WMTS
Implementations of the hyphal growth model of Balmant et al., PLoS One, 10(3), 2015.
Leandroscholz/swc_metrics
set of filament tracing metric computation utilities (for .swc files)
Leandroscholz/AerialHyphae_DLB
Python implementation of the mycelial growth model for Aerial hyphae from Coradin et al., Biochem. Eng. J. 54(3) 2011.
Leandroscholz/biotoolsSchemaDocs
Documentation for biotoolsSchema
Leandroscholz/gxl2swc
repository that shows the learning curve and the final result of a python script that reads a gxl file and converts into .swc format
Leandroscholz/swc_node_sorter
gets .swc files and sort its node list correctly in order to be accepted by DiademMetric.jar for score calculation
Leandroscholz/bise
bise development repository
Leandroscholz/course-content
Summer course content for Neuromatch Academy
Leandroscholz/datasharing
The Leek group guide to data sharing
Leandroscholz/ezTrack
Leandroscholz/factorial_design_macro
Leandroscholz/FreeScienceVectors
Collection of vectorial scientific illustrations
Leandroscholz/imagejMacros
imageJ 1 macros
Leandroscholz/KDE_tutorial
Tutorial on how to plot multiple Kernel Density estimates of two dimensional data in the same plot
Leandroscholz/leandroscholz.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
Leandroscholz/linter-markdown-51
Atom Linter markdown #51 MWE
Leandroscholz/Neubias-Bise-Documentation
Leandroscholz/neubiaswg5-utilities
Utilities for neubias wg5 softwares
Leandroscholz/NMA-armored-newt-with-lasers
repository of the project team 044-Armored-newt-with-lasers from Neuromatch Academy 2020
Leandroscholz/suite2p
cell detection in calcium imaging recordings
Leandroscholz/SWCSimulator
A python package for simulating neuron models specified in the SWC format
Leandroscholz/Tool-Information-Standard
An information standard for the description of bioinformatics software tools.
Leandroscholz/TrackMate3
This is the prototype code for the 3rd version of TrackMate, planned for mid 2017.
Leandroscholz/treestoolbox
TREES toolbox
Leandroscholz/v3d_external
www.vaa3d.org : download the latest Binary version here https://github.com/Vaa3D/release/releases/tag/v3.200
Leandroscholz/W_NeuronTracing_vaa3d
Vaa3d based dockerised workflow for Neubias WG5