Leandroscholz

Leandroscholz's Stars

• lmcinnes/umap

  Uniform Manifold Approximation and Projection

  Language:Python7.7k127816822

• NeuromatchAcademy/course-content

  NMA Computational Neuroscience course

  Language:Jupyter Notebook2.7k952161k

• imageio/imageio

  Python library for reading and writing image data

  Language:Python1.6k31613308

• stardist/stardist

  StarDist - Object Detection with Star-convex Shapes

  Language:Python1k28236236

• RainCloudPlots/RainCloudPlots

  Code and tutorials to visualise your data that is both beautiful *and* statistically valid

  Language:HTML8462250221

• benfulcher/hctsa

  Highly comparative time-series analysis

  Language:MATLAB7564846327

• openUC2/UC2-GIT

  Respository for Open-Science modular microscope system.

  Language:Jupyter Notebook488478871

• KordingLab/Neural_Decoding

  A python package that includes many methods for decoding neural activity

  Language:Jupyter Notebook4452414122

• DynamicsAndNeuralSystems/catch22

  catch22: CAnonical Time-series CHaracteristics

  Language:C394102668

• sgoldenlab/simba

  SimBA (Simple Behavioral Analysis), a pipeline and GUI for developing supervised behavioral classifiers

  Language:Python31017338152

• alan-turing-institute/rse-course

  Materials for The Alan Turing Institute's Research Software Engineering course

  Language:Jupyter Notebook2452283116

• MouseLand/rastermap

  a visualization method for neural data

  Language:Python211122849

• BiAPoL/Bio-image_Analysis_with_Python

  Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecular and Cellular Bioengineering (CMCB) / University of Technology, TU Dresden

  Language:Jupyter Notebook204181050

• aterenin/phdthesis

  Gaussian Processes and Statistical Decision-making in Non-Euclidean Spaces

  Language:TeX1981307

• Mogeng/IOHMM

  Input Output Hidden Markov Model (IOHMM) in Python

  Language:Python165141836

• Mark-Kramer/Case-Studies-Python

  An introduction to the practicing neuroscientist to data analysis in Python

  Language:Jupyter Notebook157111760

• giesekow/deepvesselnet

  Implementation of the DeepVesselNet deep learning network

  Language:Python14441732

• codeisscience/code-is-science

  Scientific code needs to be open source and peer reviewed

  Language:CSS137195432

• syrte/ndtest

  multi-dimensional statistical test with python

  Language:Python935626

• mooch443/trex

  TRex, a fast multi-animal tracking system with markerless identification, and 2D estimation of posture and visual fields.

  Language:C++9049310

• AdaptiveMotorControlLab/CellSeg3D

  A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks

  Language:Jupyter Notebook8032913

• guiwitz/NumpyPandas_course

  Introduction to Numpy and Pandas

  Language:Jupyter Notebook545036

• bonsai-rx/deeplabcut

  A Bonsai interface for real-time markerless pose estimation using DeepLabCut

  Language:C#4911229

• mesoSPIM/mesoSPIM-hardware-documentation

  Hardware documentation for the mesoSPIM microscope project

  341784

• oliviermirat/ZebraZoom

  ZebraZoom can be used on fixed background videos to track the heads and tails of freely swimming and of head-embedded zebrafish as well as the center of mass of any kind of animal. ZebraZoom can also be used to compare populations based on kinematic parameters and on behavioral clustering. https://zebrazoom.org/documentation/docs/intro

  Language:Python313427

• p00ya/climbing_ratings

  route and climber ratings for rock climbing

  Language:Python26713

• owenrandlett/Z-Brain

  Z-Brain Viewer and Analysis Scripts for MAP-Mapping

  Language:MATLAB22536

• guiwitz/Fundamentals_image_processing

  Course material for fundamentals in digital image processing

  Language:Jupyter Notebook20614

• orger-lab/megabouts

  A flexible pipeline for analyzing zebrafish locomotion

  Language:Python11340

• seqan/learning-resources

  Provides online material and tutorials for modern C++, efficient data structures and algorithms.

  Language:C++61356