Pinned Repositories
CellProfiler
CellProfiler mirror of the SVN repository. Note that currently, this repository is updated manually from a git-svn clone of the official SVN repository (see Cloning_in_git.txt).
imagej
ImageJ2: the next-generation version of ImageJ
imglib
A generic next-generation Java library for image processing
isbi_challenge
Code for my entry in the ISBI 2012 challenge.
pyemd
A Python wrapper around FastEMD by Ofir Pele
python-javabridge
Python wrapper for the Java Native Interface
LeeKamentsky's Repositories
LeeKamentsky/python-javabridge
Python wrapper for the Java Native Interface
LeeKamentsky/CellProfiler
CellProfiler mirror of the SVN repository. Note that currently, this repository is updated manually from a git-svn clone of the official SVN repository (see Cloning_in_git.txt).
LeeKamentsky/bioformats
Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment (particularly UW-Madison LOCI and Glencoe Software). Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.
LeeKamentsky/build-ilastik-on-windows
Build Ilastik and its dependencies on Windows using setuptools
LeeKamentsky/centrosome
An open source image processing library
LeeKamentsky/ceph-container
Docker files and images to run Ceph in containers
LeeKamentsky/chunglab-neuroglancer-tools
Some tools for adding URLs to Leviathan and displaying them
LeeKamentsky/example-notebooks
LeeKamentsky/IDM
cython version of IDM
LeeKamentsky/ilastik-0.5
Interactive Learning and Segmentation Toolkit
LeeKamentsky/ingest-client
A Python command line application for performing distributed ingest of image data into the Boss
LeeKamentsky/keras
Deep Learning library for Python. Runs on TensorFlow, Theano, or CNTK.
LeeKamentsky/leek-test-lfs
see if I can store a binary using git-lfs
LeeKamentsky/linux-healthcheck
My personal daily health checkup on my linux box
LeeKamentsky/microscoper
A simple wrapper for python-bioformats to convert .vsi CellSense format to TIFF.
LeeKamentsky/neuroglancer
WebGL-based viewer for volumetric data
LeeKamentsky/NeuroProof
Tool for graph-based image segmentation and analysis
LeeKamentsky/Neuroproof_minimal
LeeKamentsky/nuggt
NeUroGlancer Ground Truth - annotate cell centers
LeeKamentsky/numcodecs
A Python package providing buffer compression and transformation codecs for use in data storage and communication applications.
LeeKamentsky/oauthenticator
GitHub OAuth + JupyterHub Authenticator = OAuthenticator
LeeKamentsky/path2json
Convert whatever is at the end of a path to JSON
LeeKamentsky/ping-party
Send and receive UDP packets to and from hosts on a subnet.
LeeKamentsky/PyMaxflow
Python library for creating flow networks and computing the maxflow/mincut (aka graph-cuts for Python)
LeeKamentsky/pytest
The pytest testing tool makes it easy to write small tests, yet scales to support complex functional testing
LeeKamentsky/scikit-image
Image Processing SciKit (Toolbox for SciPy)
LeeKamentsky/shelllnk
A Python package to read Microsoft Shell Link (.lnk) files.
LeeKamentsky/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
LeeKamentsky/tileimg
Java program to create tiles out of large TIF planes
LeeKamentsky/zwatershed
Cython functions for fast watersheds and segmentation metrics