LeeKamentsky

Pinned Repositories

CellProfiler
CellProfiler mirror of the SVN repository. Note that currently, this repository is updated manually from a git-svn clone of the official SVN repository (see Cloning_in_git.txt).
Language:Python1 3 00
imagej
ImageJ2: the next-generation version of ImageJ
Language:Java2 2 00
imglib
A generic next-generation Java library for image processing
Language:Java1 2 00
isbi_challenge
Code for my entry in the ISBI 2012 challenge.
Language:Python10
pyemd
A Python wrapper around FastEMD by Ofir Pele
Language:C++6 2 00
python-javabridge
Python wrapper for the Java Native Interface
Language:Python115 11 16163

LeeKamentsky's Repositories

LeeKamentsky/pyemd
A Python wrapper around FastEMD by Ofir Pele
Language:C++6 2 00
LeeKamentsky/imagej
ImageJ2: the next-generation version of ImageJ
Language:Java2 2 00
LeeKamentsky/imglib
A generic next-generation Java library for image processing
Language:Java1 2 00
LeeKamentsky/isbi_challenge
Code for my entry in the ISBI 2012 challenge.
Language:Python10
LeeKamentsky/backend_swing
A Java/swing backend for Matplotlib using the javabridge
Language:Python2 12
LeeKamentsky/cellh5
CellH5 is an HDF5 data format for cell-based assays in high-throughput microscopy, which stores high-dimensional image data along with inter-object relations in graphs.
Language:Python2 0
LeeKamentsky/CellProfiler-Analyst
Software for exploring and analyzing large, high-dimensional image-derived data.
Language:Python2 0
LeeKamentsky/cp-filterbank
A filter-bank plug-in for CellProfiler
2 0
LeeKamentsky/glayout
Graph layout using NetworkX
Language:Python2 1
LeeKamentsky/homebrew
The missing package manager for OS X.
Language:Ruby2 0
LeeKamentsky/homebrew-python
Python formulae for Homebrew
Language:Ruby2 0
LeeKamentsky/ilastik-build-win64
CMake scripts to compile ilastik and all its dependencies on Windows 7 and 8 (64-bit)
Language:Python2 0
LeeKamentsky/KeypointAlign
Python application to align images using keypoints
Language:Python
LeeKamentsky/medianprojection
Compute the median projection of an image stack.
2 0
LeeKamentsky/MultiStackRegistration
Modified version of MultiStackRegistration, for use from scripts.
Language:Java2 0
LeeKamentsky/peskeleton
A CellProfiler module that skeletonizes a binary image using the Poisson Equation
Language:Python2 0
LeeKamentsky/Pillow
CellProfiler homebrew compatible fork of Pillow (the "friendly" PIL fork)
Language:C
LeeKamentsky/puuul
Python thread pool and execution graph
Language:Python2 0
LeeKamentsky/q3dstack
A GUI tool that quantifies the amount of stain in organelles segmented out of a 3D stack.
Language:Python
LeeKamentsky/ROIBenchmark
Region of interest benchmarking plugin for CellProfiler
Language:Python3 0
LeeKamentsky/scijava-common
A plugin framework and application container with built-in extensibility mechanism.
Language:Java2 0
LeeKamentsky/TPS-Deformation
Thin plate spline interpolation and deformation.
Language:Matlab
LeeKamentsky/vigra-ilastik-05
a generic C++ library for image analysis
Language:C++2 0
LeeKamentsky/whathappens
This repository's sole purpose is to do really stupid things with GIT and make sure whatever screwups ensue happen in a repository that I don't care about.
2 33
LeeKamentsky/wormsplines
Representation of worms as parameterized splines
2 0