Pinned Repositories
Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
awesome-datascience
:memo: An awesome Data Science repository to learn and apply for real world problems.
awesome-pipeline
A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin
awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
bamkit
A tool to process bam/sam files
bioc-refcard
Bioconductor cheat sheet
ChromosomeMappings
This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.
conda-env
A repository of the conda environments I use the most
makeUcscTrackhub
Small utility to build a UCSC trackhub to visualise your data in the genome browser
LehmannN's Repositories
LehmannN/makeUcscTrackhub
Small utility to build a UCSC trackhub to visualise your data in the genome browser
LehmannN/Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
LehmannN/awesome-datascience
:memo: An awesome Data Science repository to learn and apply for real world problems.
LehmannN/awesome-pipeline
A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin
LehmannN/awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
LehmannN/bamkit
A tool to process bam/sam files
LehmannN/bioc-refcard
Bioconductor cheat sheet
LehmannN/ChromosomeMappings
This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.
LehmannN/conda-env
A repository of the conda environments I use the most
LehmannN/cookiecutter_R
LehmannN/dockerfiles
LehmannN/gclib
GCLib - Genomic C(++) library of reusable code for bioinformatics projects
LehmannN/GUESSmyLT
An efficient way to guess the library type of your RNA-Seq data.
LehmannN/IGV-snapshot-automator
Script to automatically create and run IGV snapshot batchscripts
LehmannN/MOOC-single-cell-2023
LehmannN/Mouse-progenitors-reanalysis
LehmannN/piscine_42
Ma piscine a @42Born2Code
LehmannN/quick-portfolio
Use this template if you need a quick developer / data science portfolio! Based on a Minimal Jekyll theme for GitHub Pages.
LehmannN/r4ds
R for data science
LehmannN/reproducible-research
A Reproducible Data Analysis Workflow with R Markdown, Git, Make, and Docker
LehmannN/RSeQC
fork of RSeQC python RNAseq metrics suit of tools
LehmannN/scallopadvising
LehmannN/scAnnotatiONT
LehmannN/scAnnotatiONT-paper
Improved annotation with scRNA-seq and long reads
LehmannN/Specifications
GFF and GVF specification documents
LehmannN/template-python
A template for new Python libraries.
LehmannN/tips_and_tricks
The tips I need to remember and always forget about R, bash, awk, and other beauties