LehmannN

LehmannN's Stars

• LehmannN/makeUcscTrackhub

  Small utility to build a UCSC trackhub to visualise your data in the genome browser

  Language:Shell1

• LukeGoodsell/nextflow-vim

  Nextflow plugin for VIM

  Language:Vim script4620

• nextflow-io/awesome-nextflow

  A curated list of nextflow based pipelines

  55890

• academicpages/academicpages.github.io

  Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

  Language:JavaScript11k40k

• immunogenomics/harmony2019

  Reproduce analyses in Harmony Manuscript

  Language:Jupyter Notebook94

• pzhaonet/bookdownplus

  The easiest way to use R package bookdown for writing varied types of books and documents

  Language:R25231

• academic/awesome-datascience

  :memo: An awesome Data Science repository to learn and apply for real world problems.

  24.2k5.8k

• alanocallaghan/scater

  Clone of the Bioconductor repository for the scater package.

  Language:R9437

• nachocab/tips_and_tricks

  The tips I need to remember and always forget about R, bash, awk, and other beauties

  Language:R4215

• NVIDIA-Genomics-Research/rapids-single-cell-examples

  Examples of single-cell genomic analysis accelerated with RAPIDS

  Language:Jupyter Notebook31068

• NBISweden/GUESSmyLT

  An efficient way to guess the library type of your RNA-Seq data.

  Language:Python294

• spyder-ide/spyder-terminal

  Run system terminals inside Spyder. Works on Linux, macOS and Windows.

  Language:Python22476

• cookiecutter/cookiecutter

  A cross-platform command-line utility that creates projects from cookiecutters (project templates), e.g. Python package projects, C projects.

  Language:Python22k2k

• bxlab/bx-python

  Tools for manipulating biological data, particularly multiple sequence alignments

  Language:Python14353

• Binary-Hackers/42_Subjects

  All Subjects of 42 School

  Language:ASP1.2k291

• adblanc/netwhat42-train

  Script pour s'entraîner sur netwhat 42 / Training script for netwhat 42 project

  Language:Shell678

• 42Paris/42header

  42 header

  Language:Vim script270109

• 42Paris/norminette-v2

  Language:Ruby18520

• twbs/bootstrap

  The most popular HTML, CSS, and JavaScript framework for developing responsive, mobile first projects on the web.

  Language:JavaScript168k78.5k

• stevekm/IGV-snapshot-automator

  Script to automatically create and run IGV snapshot batchscripts

  Language:Python13549

• bioconda/bioconda-recipes

  Conda recipes for the bioconda channel.

  Language:Shell1.6k3.1k

• harvardinformatics/learning-bioinformatics-at-home

  resources for learning bioinformatics

  730138

• bioconvert/bioconvert

  Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

  Language:Python35942

• EI-CoreBioinformatics/portcullis

  Splice junction analysis and filtering from BAM files

  Language:C++369

• EI-CoreBioinformatics/mikado

  Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to select the best models in each locus.

  Language:Python8917

• dagousket/mapping_toolkit

  Language:Python3

• gpertea/stringtie

  Transcript assembly and quantification for RNA-Seq

  Language:C++35875

• Kingsford-Group/scallopadvising

  Language:Perl61

• stemangiola/tidybulk

  Brings bulk and pseudobulk transcriptomics to the tidyverse

  Language:R16323

• griffithlab/rnaseq_tutorial

  Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

  Language:R1.3k617