LinoHofstetter

Computer Science Student @ ETH Zurich

Switzerland

Pinned Repositories

dashing2
Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.
Language:C++63 5 277
bindash
Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop
Language:C++0 0 00
dashing
Fast and accurate genomic distances using HyperLogLog
Language:C++0 0 00
dashing2
Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.
Language:C++0 0 00
Mash
Fast genome and metagenome distance estimation using MinHash
Language:C++0 0 00
miniphy
Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]
Language:Python00
sketch
C++ Implementations of sketch data structures with SIMD Parallelism, including Python bindings
Language:C++0 0 00

LinoHofstetter/bindash
Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop
Language:C++0 0 00
LinoHofstetter/dashing
Fast and accurate genomic distances using HyperLogLog
Language:C++0 0 00
LinoHofstetter/dashing2
Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.
Language:C++0 0 00
LinoHofstetter/Mash
Fast genome and metagenome distance estimation using MinHash
Language:C++0 0 00
LinoHofstetter/miniphy
Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]
Language:Python00
LinoHofstetter/sketch
C++ Implementations of sketch data structures with SIMD Parallelism, including Python bindings
Language:C++0 0 00