Pinned Repositories
dynast-release
Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments
spateo-release
Spatiotemporal modeling of spatial transcriptomics
alaska-parse
Automated and friendly RNA-seq analysis (migrated to Parse Server)
fbgbp
Optimized belief propagation on arbitrary graphs with binary states.
info
Professional information. Resume, CV, assets used by Github pages website.
ngs-tools
Reusable tools for working with next-generation sequencing (NGS) data
pyseq-align
Python interface for seq-align C library
colosseum
colosseum system - open source fraction collector for laboratories
kb_python
A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing
Cassiopeia
A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction
Lioscro's Repositories
Lioscro/ngs-tools
Reusable tools for working with next-generation sequencing (NGS) data
Lioscro/fbgbp
Optimized belief propagation on arbitrary graphs with binary states.
Lioscro/pyseq-align
Python interface for seq-align C library
Lioscro/alaska-parse
Automated and friendly RNA-seq analysis (migrated to Parse Server)
Lioscro/dynast-thesis
Lioscro/alaska-sentry
Sentry On-Premise setup
Lioscro/info
Professional information. Resume, CV, assets used by Github pages website.
Lioscro/airflow
Apache Airflow - A platform to programmatically author, schedule, and monitor workflows
Lioscro/arbor-coding-challenge
Repository for the Arbor Biotechnologies internship coding challenge.
Lioscro/bebi103-9-2
Pip-installable package with functions used in hw9.2
Lioscro/biorxiv-title-bot
Powers the @biorxivtitlebot Twitter bot.
Lioscro/bustools
Tools for working with BUS files
Lioscro/Cassiopeia
A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction
Lioscro/cs155-miniproject2
Lioscro/cs155-miniproject3
Lioscro/cs2_othello
Othello Bot for CS2
Lioscro/django-postgres
Template repository for setting up Django with Postgres DB
Lioscro/fqc
Detect single-cell technology that was used to generate a set of FASTQ files or a single BAM file.
Lioscro/homepage
A lightweight, customizable single-page personal portfolio website template built with JavaScript and Sass
Lioscro/ist4-pcp-analysis
Command-line tool to help bulk execution and graph plotting for Caltech IST4 Programming Challenge.
Lioscro/kallisto
Near-optimal RNA-Seq quantification
Lioscro/lfq
Lossless compression of FASTQ sequences.
Lioscro/minecraft-server-charts
Lioscro/pwiz
The ProteoWizard Library is a set of software libraries and tools for rapid development of mass spectrometry and proteomic data analysis software.
Lioscro/react-bootstrap
Template repository to set up a React app with Bootstrap
Lioscro/scNT-seq
Data analysis pipeline for scNT-seq (single-cell metabolically labeled new RNA tagging sequencing)
Lioscro/scvi-tools
Deep probabilistic analysis of single-cell omics data
Lioscro/ST_BarcodeMap
Lioscro/TissueEnrichmentAnalysis
This repository holds the scripts for a tissue enrichment tool, which uses a hypergeometric test, apt for C. elegans use.
Lioscro/Wooey
A Django app that creates automatic web UIs for Python scripts.