Liuliu0509

Liuliu0509's Stars

• tseemann/abricate

  :mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes

  Language:Perl3642919990

• ncbi/amr

  AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.

  Language:C++2652611637

• SysBioChalmers/HGTphyloDetect

  HGTphyloDetect is a versatile toolbox to identify horizontal gene transfer (HGT) events combined with phylogenetic analysis.

  Language:Python301165

• nf-core/hgtseq

  A pipeline to investigate horizontal gene transfer from NGS data

  Language:Nextflow2115335

• ktrappe/daisy

  Horizontal Gene Transfer Detection by Mapping Sequencing Reads

  Language:Python20324

• biocore/horizomer

  Workflow for detecting genome-wide horizontal gene transfers

  Language:Python11162210

• deepomicslab/LocalHGT

  Detect complete horizontal gene transfer (HGT) event rapidly and accurately from complex metagenomics data.

  Language:Python11201

• duffymeg/BroodParasiteDescription

  Code and data associated with Duffy, James, and Longworth Applied and Environmental Microbiology paper describing the ecology, virulence, and phylogeny of a brood parasite of Daphnia, Blastulidium paedophthorum; http://dx.doi.org/10.5281/zenodo.17804

  Language:R115

• DuttonLab/kvasir

  Searching for Horizontal Gene Transfer

  Language:Python11395

• AdelaideBioinfo/horizontalTransfer

  Code used to infer and filter horizontal transfer events in eukaryotes. GPL Version 3 license.

  Language:TeX92

• britolab/GCN-HGT

  Prediction of horizontal gene transfer (HGT) using graph convolutional network

  Language:Python9514

• songweizhi/HgtSIM

  A simulator for horizontal gene transfer (HGT) in microbial communities

  Language:Python9321

• yinlabniu/HGT-Finder

  Program for finding horizontal gene transfer using BLAST result

  Language:C++9366

• hbucqp/ResBlaster

  find antimicrobial resistance/ virulence genes in assembled genomes

  Language:Python6100

• cgneo/neoHGT-v1

  neoHGT 😊 an improved HGTector horizontal gene transfer searching & analyzing experience

  Language:Python51

• josephhughes/ViCTree

  An automated framework to aid taxonomic classification of viruses

  Language:JavaScript5449

• kcri-tz/virulencefinder

  Slimmed down version of the CGE VirulenceFinder source repo

  Language:Python4100

• waterml/blast2hgt

  Determine horizontal transfers based on sequence similarity

  Language:Perl4011

• ghli16/GTAE-VF

  Identifying virulence factors using graph transformer autoencoder with ESMFold-predicted structures

  Language:Python30

• GroovyGG/VFtree

  R package for better visualization of Virulence Factors and phylogenetic trees of bacterial pan genome

  Language:R3200

• happykhan/VFDB

  Virulence factors & Islands

  Language:Python31

• J-Moravec/sighunt

  SigHunt: Tool for horizontal gene transfer detection.

  Language:R3102

• sandragodinhosilva/virulence_traits

  A tutorial on how to annotate genomes with virulence factors.

  Language:Python30

• aayushbahuguna/virulencePredictor

  Language:Java2

• BFSSI-Bioinformatics-Lab/vfdbQuery

  vfdbQuery is a simple script for querying an input genome assembly against the Virulence Factor Database (VFDB)

  Language:Python1

• dhawaldarji7/Aquaponics

  Shotgun metagenomic virulence factor detection for food safety screening of aquaponic culture water

  Language:Python1

• mariamiskander/VirulenceFactorsDB

  Virulence Factors Database

  1

• Sabita03/Fusarium-Oxysporum

  Find host specific virulence factors

  1

• stefftaelman/metagenomics-functional-annotation

  This repo contains the code to perform the annotation of virulence factors (VFs) and antimicrobial resistance (AMR) genes to whole genome metagenomic sequencing data.

  Language:Python11

• VampiroHuelva/VirulencePrediction

  This code is part of my master major internship. The virulence of A.Baumannii strains is predicted from presence/absence genes data.

  Language:R100