Llamero

Colocalization_demo_macro

This ImageJ macro demonstrates 2D vs 3D colocalization

DIY_Epifluorescence_Macroscope

This is an open-source macroscope design based on the Olympus 4x/0.28 objective.

Dual_laser_controller-Arduino

Can control two lasers off of an analog or TTL input with OLED display

Feller_Retinal_Wave_Analysis

ImageJ macros for segmenting and viewing retina waves

Four_Channel_MHz_LED_Driver

High Speed Four Channel LED Driver that can run up to 30A

Light_Color_and_Intensity_Datalogger

Measures temperature, pressure, humidity, intensity and color of light and saves it to an SD card

Local_Hough_Circle

An improved implementation

Quiver_Plot

This plugin creates a quiver plot (a.k.a. vector plot) from two images. One image contains the vector angles (degrees) and the second image contains the vector displacements (i.e. speed). This plugin is also recordable, and can be implemented in a macro

RPi_IO_Hat_v1

Raspberry Pi IO Hat for interfacing the Pi with various logic voltages

Scaled_Dial_Creator-Macro

This macro creates a scaled dial image.

Llamero/Four_Channel_MHz_LED_Driver

High Speed Four Channel LED Driver that can run up to 30A

Llamero/DIY_Epifluorescence_Macroscope

This is an open-source macroscope design based on the Olympus 4x/0.28 objective.

Llamero/Light_Color_and_Intensity_Datalogger

Measures temperature, pressure, humidity, intensity and color of light and saves it to an SD card

Llamero/Colocalization_demo_macro

This ImageJ macro demonstrates 2D vs 3D colocalization

Llamero/Feller_Retinal_Wave_Analysis

ImageJ macros for segmenting and viewing retina waves

Llamero/MHz_LED_Modulator_v2

Test

Llamero/Scaled_Dial_Creator-Macro

This macro creates a scaled dial image.

Llamero/Stage_flood_sensor

Sensor for detecting media overflow on stages

Llamero/30mm_cage_plate_LED_MCPCB

LED mount that is compatible with the Thorlabs 30 mm cage plate

Llamero/Arduino-playing-Harry-Potter-Hedwig-s-Theme

This code will play Hedwigs theme on an Arduino

Llamero/Attenuator_Controller_Board

Controller board with three RS-232 connections and a Throlabs motor controller DSub15 connection

Llamero/Behavior-Rig---Python

This code uses a Raspberry Pi to run a visual behavior experiment.

Llamero/Change_Image_Create_Date

Chages create date of image file to match date in image name

Llamero/Dendrite_tortuosity_analysis

Llamero/eLife_Stage_I_wave_analysis

ImageJ macros used to analyze stage I retina waves

Llamero/Gel_partition_analysis_macro

This macro provides an analysis pipeline for quantifying the partition coefficient in a confocal image stack.

Llamero/High-current-4x1-LED-mux

This board breaks out the high current LED driver to up to four LEDs

Llamero/High_current_LED_switch

Llamero/Isotropic_resolution_demo_macro

This ImageJ macro demonstrates the necessity of having isotropic resolution.

Llamero/KRPC_Multi-process_GUI_Controller

Controls Kerbal Space Program Rocket with GUI via KRPC

Llamero/LED_Driver_1x8_Mux

4x8 mux board for MHz LED driver

Llamero/Libault_Transcript_Localization

This macro was written for Dr. Marc Libault to analyze the localizations of transcripts in root sections

Llamero/Measure_choroid_vessels

This macro was used in a published study on choroid thickness

Llamero/Mouse_tracking_macro

This ImageJ macro uses a Hough circle transform to track a circular fiducial on mice.

Llamero/neuron_dF-F_autocorrelation

This macro finds the autocorrelation of a dF-F stack at phases equal to the period of an applied light stimulation.

Llamero/Nuclei_analysis-macro

Measures the ratio of PI:DAPI nuclei to assess cell viability

Llamero/Olympus_BX-51_DMD_epi_illuminator-

Modification to an Olympus BX-51 arm to allow patterned epi-illumination via a DMD

Llamero/Puthussery_Lab_2P_Setup

Llamero/Starboard_LED

Starboard LED template for KiCAD

Llamero/TCR_colocalization_analysis-macro

ImageJ macro to measure the colocalization of TCR mRNA with P-body and stress granule markers.