Lswhiteh
Co-Founder and CTO @ Virnika, building the next wave of customer service. Data scientist, deep learning developer, computational biologist.
VirnikaChapel Hill, NC
Pinned Repositories
bioinfo-links
I got tired of bookmarking everything I found useful in my browser, so here's an organized list of stuff I think is useful/cool.
conda-tutorial
A little bit of documentation explaining how to use conda environments for reproducible bioinformatics.
diatom-metatranscriptomics
Marchetti lab pipeline for diatom metatranscriptomics analyses using Kallisto, Diamond, and DeSeq2 in conjunction with PhyloDB.
handy_things
Various one-liner/short scripts and commands for everyday usage, focused on bioinformatics.
MEA_Data_Analysis
Various scripts to organize and analyze multi-channel electrode array data.
PhyloMatcher
Python module to query GBIF or the NCBI Taxonomy database for synonym names of target species.
unc-dissertation
UNC Bioinformatics and Computational Biology Dissertation based on https://github.com/jayrobwilliams/UNC-Dissertation-Template/tree/master
Timesweeper
Python package for detecting positive selective sweeps using time-series genomics sampling data.
timesweeper-experiments
Repo for experiments for the TimeSweeper manuscript.
Lswhiteh's Repositories
Lswhiteh/bioinfo-links
I got tired of bookmarking everything I found useful in my browser, so here's an organized list of stuff I think is useful/cool.
Lswhiteh/unc-dissertation
UNC Bioinformatics and Computational Biology Dissertation based on https://github.com/jayrobwilliams/UNC-Dissertation-Template/tree/master
Lswhiteh/PhyloMatcher
Python module to query GBIF or the NCBI Taxonomy database for synonym names of target species.
Lswhiteh/diatom-metatranscriptomics
Marchetti lab pipeline for diatom metatranscriptomics analyses using Kallisto, Diamond, and DeSeq2 in conjunction with PhyloDB.
Lswhiteh/handy_things
Various one-liner/short scripts and commands for everyday usage, focused on bioinformatics.
Lswhiteh/MEA_Data_Analysis
Various scripts to organize and analyze multi-channel electrode array data.
Lswhiteh/conda-tutorial
A little bit of documentation explaining how to use conda environments for reproducible bioinformatics.
Lswhiteh/AdventOfCode2022
Time to learn Rust
Lswhiteh/bios611-project1
Lswhiteh/ChipSeq_Quick-and-Dirty
Had 3 days to run some chipseq data that I recieved with 1 day to spare, here's the results of late night frantic figuring out a workflow.
Lswhiteh/Comp790-166-Comp-Bio
Computational Biology- Spring 2021
Lswhiteh/easy-snakemake
Quick tutorial and example code for using Snakemake in a non-NGS context.
Lswhiteh/Lswhiteh
Config files for my GitHub profile.
Lswhiteh/lswhiteh.github.io
Lswhiteh/phylodbannotation
Small script and sample data to merge phylodb data with Kallisto/Salmon/DIAMOND output for gene and taxonomy annotation.
Lswhiteh/phylokit
Phylogenetics toolkit for the PyData Ecosystem
Lswhiteh/pop_gen_cnn
Lswhiteh/popvae
genotype dimensionality reduction with a VAE
Lswhiteh/ShinySnakemake
Shiny Python boilerplate for Snakemake runs.