LuLexiLiu

LuLexiLiu's Stars

• rstickels/Slide_seqv2

  notebooks for loading Slide-seqV2 data and some associated analyses

  Language:Jupyter Notebook94

• aertslab/Nova-ST

  A repository containing the analysis scripts for Nova-ST data

  Language:Jupyter Notebook7

• rajewsky-lab/spacemake

  Language:Python3711

• lanadominkovic/12-days-of-biopython

  12 days of Biopython is a collection of 12 videos explaining in details how to work with Biopython, a bioinformatics tool using a real life examples.

  Language:Jupyter Notebook4729

• rajewsky-lab/openst

  Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab

  Language:HTML7510

• cancer-genomics/delfi_scripts

  Language:R6943

• 10XGenomics/cellranger

  10x Genomics Single Cell Analysis

  Language:Rust35592

• flekschas/hipiler

  Visual exploration of large genome interaction matrices with interactive small multiples.

  Language:JavaScript13

• deeptools/HiCBrowser

  Simple web browser to visualize HiC tracks

  Language:JavaScript185

• XiaoTaoWang/HiCPeaks

  A Python implementation for BH-FDR and HiCCUPS

  Language:Python419

• aidenlab/juicer

  A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

  Language:Shell413181

• akdemirlab/HiCPlotter

  “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau

  Language:Python18279

• gersteinlab/HiC-spector

  Spectral and reproducibility analysis of Hi-C contact maps

  Language:Julia107

• mohamed-amine-guerras/HiC3DViewer

  an interactive webbased tool for the interactive 3D visualization and exploratory analysis of Hi-C data.

  Language:JavaScript43

• koszullab/hicstuff

  Simple library/pipeline to generate and handle Hi-C data.

  Language:Python377

• koszullab/3C_tutorial

  Step by step command-line tutorial to process Hi-C data

  Language:Python41

• jpiper/pyDNase

  Python module for the easy handling and analysis of DNase-seq data

  Language:Python3724

• lindenb/jvarkit

  Java utilities for Bioinformatics

  Language:Java480133

• odelaneau/shapeit5

  Segmented HAPlotype Estimation and Imputation Tool

  Language:C++669

• jmschrei/pomegranate

  Fast, flexible and easy to use probabilistic modelling in Python.

  Language:Python3.4k588

• im3sanger/dndscv_data

  Supplementary files for specific applications of dNdScv.

  42

• broadinstitute/gatk-docs

  Documentation archive for GATK tools and workflows

  Language:HTML8351

• unknownskl/greenlight

  Greenlight is an open-source client for xCloud and Xbox home streaming made in Typescript.

  Language:TypeScript2.2k123

• gatk-workflows/gatk4-basic-joint-genotyping

  Basic joint genotyping with GATK4. NOT Best Practices, only for teaching/demo purposes.

  Language:wdl61

• gatk-workflows/gatk4-jupyter-notebook-tutorials

  This repository contains Jupyter Notebooks containing GATK Best Practices Workflows

  Language:Jupyter Notebook2411

• im3sanger/dndscv

  dN/dS methods to quantify selection in cancer and somatic evolution

  Language:HTML21148

• kjfx/AX6000

  小米 AX6000 科学上网，开启ssh刷机，AX6000 openwrt xiaomi shellclash

  68391

• DingWB/PyComplexHeatmap

  PyComplexHeatmap: A Python package to plot complex heatmap (clustermap)

  Language:Python27830

• jokergoo/ComplexHeatmap

  Make Complex Heatmaps

  Language:R1.3k227

• dceoy/pdbio

  Pandas-based Data Handler for VCF, BED, and SAM Files

  Language:Python321