Cell Ranger is a set of analysis pipelines that perform sample demultiplexing, barcode processing, single cell 3' and 5' gene counting, V(D)J transcript sequence assembly and annotation, and Feature Barcode analysis from 10x Genomics Chromium Single Cell data.
Please note that this source code is made available only for informational purposes. 10x does not provide support for interpreting, modifying, building, or running this code.
The officially supported release binaries are available at https://www.10xgenomics.com/support/software/cell-ranger/downloads. Documentation is available at https://www.10xgenomics.com/support/software/cell-ranger.