10x Genomics

Pinned Repositories

bamtofastq
Convert 10x BAM files to the original FASTQs compatible with 10x pipelines
Language:Rust59 15 326
cellranger
10x Genomics Single Cell Analysis
Language:Rust366 35 22394
loupeR
Convert Seurat objects to 10x Genomics Loupe files.
Language:R100 10 5315
rust-boomphf
Fast and scalable minimal perfect hashing for massive key sets
Language:Rust137 19 1427
rust-debruijn
De Bruijn graphs in Rust
Language:Rust63 24 517
scHLAcount
Count HLA alleles in single-cell RNA-seq data
Language:TeX59 7 2112
single-cell-3prime-paper
Language:R83 21 535
subset-bam
Language:Rust69 13 1610
supernova
10x Genomics Linked-Read Diploid De Novo Assembler
Language:C++64 13 726
vartrix
Single-Cell Genotyping Tool
Language:Rust199 18 6326

10x Genomics's Repositories

10XGenomics/cellranger
10x Genomics Single Cell Analysis
Language:Rust366 35 22394
10XGenomics/vartrix
Single-Cell Genotyping Tool
Language:Rust199 18 6326
10XGenomics/rust-boomphf
Fast and scalable minimal perfect hashing for massive key sets
Language:Rust137 19 1427
10XGenomics/loupeR
Convert Seurat objects to 10x Genomics Loupe files.
Language:R100 10 5315
10XGenomics/subset-bam
Language:Rust69 13 1610
10XGenomics/rust-debruijn
De Bruijn graphs in Rust
Language:Rust63 24 517
10XGenomics/bamtofastq
Convert 10x BAM files to the original FASTQs compatible with 10x pipelines
Language:Rust59 15 326
10XGenomics/rust-pseudoaligner
Single-Cell RNA-seq pseudo-aligner
Language:Rust50 10 314
10XGenomics/enclone
VDJ Clonotyping & Analysis Tools
Language:Rust47 14 514
10XGenomics/lz4-rs
Rust LZ4 bindings
Language:Rust47 3 1827
10XGenomics/rust-shardio
Out-of-memory sorting of large datasets map / reduce style processing
Language:Rust47 15 54
10XGenomics/HumanColonCancer_VisiumHD
Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using high definition spatial profiling"
Language:R39 5 63
10XGenomics/rust-toolbox
Rust utility code
Language:Rust32 14 114
10XGenomics/janesick_nature_comms_2023_companion
Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spatial and in situ analysis of FFPE tissue"
Language:Jupyter Notebook15 2 13
10XGenomics/orbit
Rust wrapper for STAR aligner
Language:C15 15 02
10XGenomics/fastq_set
Tools for working FASTQ files from sequencers (R1/R2/I1/I2)
Language:Rust14 12 03
10XGenomics/scan-rs
Single-cell analysis methods in Rust
Language:Rust14 5 11
10XGenomics/analysis_guides
10x Genomics analysis guides files
Language:Jupyter Notebook6 7 010
10XGenomics/websummary
Generate an HTML report in Rust
Language:Rust5 2 0
10XGenomics/enclone_ranger
Core components for enclone
Language:Rust4 9 04
10XGenomics/clippy-check
📎 GitHub Action for PR annotations with clippy warnings
Language:TypeScript3 2 0
10XGenomics/rules_conda
Bazel rules for creating conda environments
Language:Go3 3 31
10XGenomics/seurat
R toolkit for single cell genomics
Language:R2 2 03
10XGenomics/cell-annotation-service-client
Python client libraries for Cellarium Cloud Cell Annotation Service (CAS).
Language:Python1 1 0
10XGenomics/ndarray-linalg
Linear algebra package for rust-ndarray using LAPACK binding
Language:Rust1 2 0
10XGenomics/zarr
Rust implementation of the Zarr N-dimensional array format.
Language:Rust1 1 00
10XGenomics/fftw
FFTW3 binding for Rust
10XGenomics/FIt-SNE
Fast Fourier Transform-accelerated Interpolation-based t-SNE (FIt-SNE)
Language:C++0 0
10XGenomics/hdf5-rust
HDF5 for Rust
Language:Rust2 03
10XGenomics/intel-mkl-src
Redistribute Intel MKL as a crate
Language:Rust2 0