Issues
- 1
- 2
cellranger atac count (force cells issue)
#232 opened by samandmac - 1
ERROR in running Cellranger multi for BEAM-T
#242 opened by Esche-Hohenstein - 2
error in cellranger-atac mkref
#226 opened by rahulnutron - 2
Cellranger MkRef Error
#228 opened by shamer3 - 2
UMI indel correction
#241 opened by dakyung99 - 1
Different ways to identify gtf format between version 7.0.0 and 7.2.0 of Cellranger
#240 opened by lexuziandyu - 1
- 1
Illegal instruction (core dumped)
#238 opened by nashanghenzan - 1
CellRanger Multi Feature Barcode Error
#237 opened by shamer3 - 2
incompatible with all the chemistries
#236 opened by ab4cp - 1
aligning to a multi-reference w/ ambiguities
#234 opened by stanleyjs - 1
- 3
What is needed from ./external/?
#231 opened by nick-youngblut - 4
- 0
CellRanger count include-introns
#187 opened by kikegoni - 0
- 2
CellRanger Stage Memory Issue
#190 opened by 1onic - 0
- 0
Theory of infer multiplets
#192 opened by Bio-MingChen - 1
ATAC- Cell Ranger ARC
#193 opened by jiangzh-coder - 2
urgent: cellranger-arc questions
#194 opened by jiangzh-coder - 1
spaceranger mapping problem
#198 opened by fenghuijian - 2
How to run cellranger on Apple M1/2 machines
#199 opened by RenGroup - 1
CellRanger3 vs CellRanger5 deviating results for annotation of TRA and TRB in VDJ
#200 opened by Close-your-eyes - 1
Obtain fastQ file from .bam files
#201 opened by pmarzano97 - 1
Cellranger count creating an empty matrix.mtx after adding 'N' and '#' to R1 UMI and quality respectively to account for 9bp UMI.
#202 opened by JHorder - 2
cellranger multi only assigning one CMO
#205 opened by cap76 - 1
how to solve SGE mode error
#206 opened by felixlee0608 - 2
error while running cellranger vdj pipeline on cluster
#207 opened by Ktek28 - 1
Is there a reason why cellranger multi does not support 5'-chemistry CMO libraries?
#211 opened by dmalzl - 1
- 1
Selecting primary alignment in duplicate reads
#213 opened by kwcurrin - 1
Dehash fastq files
#214 opened by royfrancis - 0
cellranger-7.1.0: patches to fix broken PYTHONPATHs
#218 opened by mmokrejs - 5
cellranger-7.1.0: Fix cluster execution --jobmode=torque and --jobmode=pbspro
#219 opened by mmokrejs - 9
CellRanger-ARC for Arbidosis failed with error
#220 opened by nilesh-iiita - 1
FASTQ file names with _001
#222 opened by Serena-Fang - 1
- 1
Cellranger-arc peak annotation error - bedtools
#224 opened by yigitbabal - 2
Duplicate FASTQs found when use cellranger count for Feature Barcode Analysis
#225 opened by mengchengyao - 1
Brcode Rank Plot y-axis scale
#227 opened by MartaBenegas - 1
spaceranger mkfastq [error] You must specify either a samplesheet or CSV file.
#229 opened by feasiblee - 3
getting more estimated number of cells
#233 opened by archana433 - 5
- 4
error: The subcommand 'mkref --genome=GRCh38' wasn't recognized Did you mean 'mkref'? If you believe you received this message in error, try re-running with 'cellranger -- mkref --genome=GRCh38
#217 opened by QianRongAn - 3
- 2
mkref gtf errors after v4.0.0
#204 opened by cap76 - 2
- 2
Generating alerts.json in the count pipeline
#188 opened by jeramand