Pinned Repositories
cellranger
10x Genomics Single Cell Analysis
zebrahub_analysis
Analysis of single-cell single-embryo RNA seq data from the zebrafish developmental atlas Zebrahub.
deepTools
Tools to process and analyze deep sequencing data.
xQTLbiolinks
xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs
web
SPOTlight
Spatial Transcriptomics Capture Location Deconvolution
kb_python
A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing
JWAS.jl
Julia for Whole-genome Analysis Software
seurat
R toolkit for single cell genomics
VIA
trajectory inference