dmalzl
coding enthusiast / biological data scientist / intrigued by the complexity of modern computer everything
CeMM - Research Center for Molecular Medicine of the Austrian Academy of SciencesVienna Austria
Pinned Repositories
casanovo
De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model
counhto
An easy to use tool to count hashtag oligos from 10x cellranger output
depthcharge
A deep learning toolkit for mass spectrometry
genomap
An easy to use tool to generate heatmap like tracks for the UCSC Genome Browser
hello-github-actions
howto-nf
Example workflow illustrating how to use nextflow in sequence data analysis
mathcode
jupyter notebooks for the course mathematisches programmieren
metadatamapping
A python library to fetch metadata from NCBI and MetaSRA for a list of NCBI accessions and data extraction from ARCHS4
metasra
MetaSRA: normalized sample-specific metadata for the Sequence Read Archive
pylluvial
A python library for creating alluvial diagrams
dmalzl's Repositories
dmalzl/pylluvial
A python library for creating alluvial diagrams
dmalzl/metadatamapping
A python library to fetch metadata from NCBI and MetaSRA for a list of NCBI accessions and data extraction from ARCHS4
dmalzl/casanovo
De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model
dmalzl/counhto
An easy to use tool to count hashtag oligos from 10x cellranger output
dmalzl/depthcharge
A deep learning toolkit for mass spectrometry
dmalzl/genomap
An easy to use tool to generate heatmap like tracks for the UCSC Genome Browser
dmalzl/hello-github-actions
dmalzl/howto-nf
Example workflow illustrating how to use nextflow in sequence data analysis
dmalzl/mathcode
jupyter notebooks for the course mathematisches programmieren
dmalzl/metasra
MetaSRA: normalized sample-specific metadata for the Sequence Read Archive
dmalzl/nextflow-ngs
Generic Nextflow processes for next-generation sequencing data analysis
dmalzl/numerics
A repository containing code for the practical in numerical mathematics
dmalzl/pydemux
An easy to use python tool for fast sequence data demultiplexing
dmalzl/shields
Concise, consistent, and legible badges in SVG and raster format
dmalzl/yoRISC
A bit of code to interconvert objects between the Seurat and RISC environments for scRNA-seq data analysis
dmalzl/nnclassifier
A simple library for building neural networks for multi-class classification