Pinned Repositories
Analytics_Module
Flask-based server handling data requests from the UI Module (VRNetzer)
BioProfiling.jl
A flexible Julia toolkit for high-dimensional cellular profiles
CartoGRAPHs
cartoGRAPHs_app
A webbased visualization framework for networks.
datadivr-demo
Demo version of the DataDiVR 3-D network visualization software
DataDiVR_WebApp
hci-immune-synapse
Companion repository for the article "Morphological profiling of human T and NK lymphocytes identifies actin-mediated control of the immunological synapse"
MultiOme
Network-based project to explore gene connectivity through biological scales
Perturbome
Code to reproduce the study: Mapping the perturbome network of cellular perturbations.
VRNetzer
A Virtual Reality platform for interactive, immersive network exploration.
Menche Lab's Repositories
menchelab/VRNetzer
A Virtual Reality platform for interactive, immersive network exploration.
menchelab/MultiOme
Network-based project to explore gene connectivity through biological scales
menchelab/CartoGRAPHs
menchelab/BioProfiling.jl
A flexible Julia toolkit for high-dimensional cellular profiles
menchelab/DataDiVR_WebApp
menchelab/cartoGRAPHs_app
A webbased visualization framework for networks.
menchelab/Analytics_Module
Flask-based server handling data requests from the UI Module (VRNetzer)
menchelab/ISMB_ECCB_2023_Network_VR_Visualization
menchelab/network_course
menchelab/radipop_scripts
Scripts to train and validate random forest model for HVPG prediction
menchelab/STRING-VRNetzer
Access protein-protein association networks from STRING DB in VRNetzer
menchelab/StringEx
Contains the StringEx extension for the VRNetzer backend
menchelab/apobex
menchelab/Exposome
This repository will contain the analyses for the human exposure network paper
menchelab/hfd-mutagenesis
Code for Analysis and Figures of Manuscript "Mutational Landscape of Intestinal Stem Cells After Long-term in Vivo Exposure to High Fat Diet"
menchelab/sctools
Collection of helper functions to make large scale single cell analysis more bearable
menchelab/catwork
Enables participants of an event to scan each others QR codes and creates a social network in real time
menchelab/CytoDiVR
Cytoscape Application to provide feature for the use of the DataDiVR
menchelab/datadivr
datadivr toolset
menchelab/ExampleExtension
Example Repository of an VRNetzer backend extension
menchelab/Grundtner_et_al_2024
All the code used for data analysis with MEFISTO
menchelab/MultiOmeExplorer
The shiny app for detailed data exploration complementing Buphamalai et.al.
menchelab/mutsigints
Interactions of mutational signatures and cancer states
menchelab/mutsigintsKit
Functions for the mutsigints project.
menchelab/Neuwirth_Malzl_et_al_2024
Code repository for all analyses shown in Neuwirth and Malzl et al. 2024
menchelab/novarinocollab
A repository containing the code for the collaboration with the Novarino lab
menchelab/PPI_Spread_for_MutSig
Spread mutations capture disturbed repair modules in the PPI
menchelab/ProteinStructureFetch
Repository for the ProteinStructureFetch extensions. An extension for the VRNetzer ecosystem.
menchelab/rgb4k
this about color rgb rainbow max experience force lumination
menchelab/SA_bone_marrow
scRNA-seq analysis of the Radhouani et al.