10x Genomics

Pinned Repositories

bamtofastq
Convert 10x BAM files to the original FASTQs compatible with 10x pipelines
Language:Rust61 14 336
cellranger
10x Genomics Single Cell Analysis
Language:Rust387 35 22494
loupeR
Convert Seurat objects to 10x Genomics Loupe files.
Language:R114 10 5715
rust-boomphf
Fast and scalable minimal perfect hashing for massive key sets
Language:Rust139 19 1527
rust-debruijn
De Bruijn graphs in Rust
Language:Rust66 24 517
single-cell-3prime-paper
Language:R84 21 536
spaceranger
Language:Rust00
subset-bam
Language:Rust72 13 169
supernova
10x Genomics Linked-Read Diploid De Novo Assembler
Language:C++65 13 725
vartrix
Single-Cell Genotyping Tool
Language:Rust203 18 6326

10x Genomics's Repositories

10XGenomics/single-cell-3prime-paper
Language:R84 21 536
10XGenomics/supernova
10x Genomics Linked-Read Diploid De Novo Assembler
Language:C++65 13 725
10XGenomics/longranger
10x Genomics Linked-Read Alignment, Variant Calling, Phasing, and Structural Variant Calling
Language:Python30 7 53
10XGenomics/lariat
Linked-Read Alignment Tool
Language:Go27 21 157
10XGenomics/single-cell-3prime-snp-clustering
Language:Python22 23 48
10XGenomics/cellranger-atac
Language:Python19 6 89
10XGenomics/rust-bwa
Rust wrapper of the BWA C API
Language:Rust18 14 210
10XGenomics/thermite
Spliced short read aligner implemented in Rust
Language:Rust8 6 21
10XGenomics/rust-bio
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
Language:Rust4 2 0
10XGenomics/supernova-chili-pepper
Language:C++2 16 02
10XGenomics/cellranger-dna
Single Cell DNA Copy Number Profiling
Language:Go1 3 11
10XGenomics/hts
biogo high throughput sequencing repository
Language:Go1 6 01
10XGenomics/louvain
Louvain graph clustering
Language:C++1 12 0
10XGenomics/napari
napari: a fast, interactive, multi-dimensional image viewer for python
Language:Python1 3 0
10XGenomics/pyBigWig
A python extension for quick access to bigWig and bigBed files
Language:C1 5 0
10XGenomics/rust-htslib
This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.
Language:Rust1 6 0
10XGenomics/souporcell
Clustering scRNAseq by genotypes
Language:Python1 2 0
10XGenomics/sprs
sparse linear algebra library for rust
Language:Rust1 2 0
10XGenomics/ball-tree
A ball-tree implementation for K-NN
Language:Rust2 0
10XGenomics/bwa
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
Language:C1
10XGenomics/chromium-genome-paper
Analysis code from "Resolving the Full Spectrum of Human Genome Variation using Linked-Reads"
Language:Jupyter Notebook
10XGenomics/docopt.go
A command-line arguments parser that will make you smile.
Language:Go5 0
10XGenomics/go-sqlite3
sqlite3 driver for go that using database/sql
Language:C
10XGenomics/htslib
C library for high-throughput sequencing data formats
Language:C2 0
10XGenomics/index_hopping_filter
Filter index-hopped reads from flowcell data
6 2
10XGenomics/nanopb
Protocol Buffers with small code size
Language:C2 0
10XGenomics/rkm
Generic k-means implementation written in Rust
Language:Rust2 0
10XGenomics/samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
Language:C6 0
10XGenomics/simdeez
easy simd
10XGenomics/typescript-definitions