10XGenomics/vartrix

Issues

• duplicate snp names

  #126 opened 2 months ago by lindsdudley
  0

• [ERROR] Sequence 1 not seen in FASTA

  #72 opened 3 years ago by rohankodgule
  2

• Unable to use the tool

  #62 opened 2 years ago by adhisadi
  3

• installation issue

  #125 opened 3 months ago by nbahlis
  3

• Help find problematic file with error 'Failed to seek to offset'

  #124 opened 4 months ago by richelbilderbeek
  0

• one-off error in error message "has invalid alternative characters"

  #122 opened 6 months ago by HenriettaHolze
  3

• Low coverage at exon boundaries and question about 10X 5' scRNA-seq data

  #123 opened 6 months ago by HenriettaHolze
  0

• Smart Seq 2 - bams without BC tag

  #121 opened 8 months ago by mea2712
  1

• What's the use of VCF file?

  #113 opened a year ago by FionaMoon
  0

• vartrix drops barcodes

  #82 opened a year ago by Cathy94
  0

• Error in VCF format ?

  #53 opened 4 years ago by atourneu
  3

• error of vcf format

  #67 opened 3 years ago by songeric1107
  1

• vartrix Crash Report

  #66 opened 2 years ago by sanchezy
  2

• error of umi

  #78 opened 2 years ago by chenjy327
  1

• Can one include this software into a nextflow pipeline?

  #70 opened 2 years ago by stela2502
  1

• vartrix Crash Report

  #80 opened 2 years ago by sagnikbanerjee15
  1

• Unequal number of reference reads

  #73 opened 3 years ago by grasshoffm
  4

• Coverage of reads when using umi mode

  #71 opened 3 years ago by korakusa
  1

• vartrix drops barcodes so that output files can no longer be linked to the original barcodes

  #59 opened 4 years ago by ejvandenoord
  2

• Support bgzip fasta file

  #69 opened 3 years ago by timoast
  0

• Out of Memory Error for MT library

  #68 opened 3 years ago by grasshoffm
  0

• Is there any way to speed the program?

  #35 opened 5 years ago by YiweiNiu
  7

• hello.How to judge the validity of the results? The results I run are completely different from those of cellSNP-Lite

  #65 opened 3 years ago by liudagehhhhhh
  0

• VarTrix calls reference reads in a cell line that does not contained reference reads

  #64 opened 3 years ago by dcruz5h
  0

• What does consensus value equals to 2 mean?

  #63 opened 3 years ago by mzhang0215
  0

• discrepancy between alt_frac and coverage methods

  #43 opened 5 years ago by igordot
  1

• Calling the same physical positions between sequencing runs

  #60 opened 3 years ago by gertzem
  3

• No alt reads for called SNPs

  #58 opened 4 years ago by grasshoffm
  0

• Best strategy for non-coding variants

  #57 opened 4 years ago by RegnerM2015
  0

• Cell number differ between input and output

  #54 opened 4 years ago by MagpiePKU
  11

• Genotyping cancer cells (non-diploid)

  #56 opened 4 years ago by RegnerM2015
  1

• Error in VCF format?

  #46 opened 5 years ago by xiweiwu
  1

• Crash report

  #55 opened 4 years ago by Ping-lin14
  0

• Error writing out-matrix

  #52 opened 4 years ago by sylvia-science
  1

• MacOS Binary

  #51 opened 4 years ago by rschauner
  1

• Error starting VarTrix

  #45 opened 4 years ago by michelgw
  10

• Thank you @pmarks, I just tried to delete the entire source file and download from release page again, after I run cargo test --release, I could not compile the new source file. The error goes as following:

  #50 opened 4 years ago by Antioxidantcoco
  1

• Error on compiling on source

  #48 opened 4 years ago by Antioxidantcoco
  2

• Generating VCF File

  #49 opened 4 years ago by sahh04
  1

• vartrix crashes with "assertion failed: col < self.cols"

  #47 opened 4 years ago by gokceneraslan
  2

• add to meta data on seurat

  #44 opened 5 years ago by ahdee
  0

• output matrix alt_frac mode NaNs

  #41 opened 5 years ago by igordot
  0

• About the [ERROR]: The resulting matrix has a sum of 0.

  #37 opened 5 years ago by WeiZhu1998
  13

• Compile issue

  #38 opened 5 years ago by moravveji
  6

• pre-compiled binaries

  #39 opened 5 years ago by igordot
  6

• the problem of Installation

  #34 opened 5 years ago by crystal0721
  1

• Annotation of no called, ref/ref, alt/alt, and alt/ref

  #33 opened 5 years ago by zezhuo
  1

• 'Number of alignments skipped due to not being useful'

  #32 opened 5 years ago by Puriney
  1

• Would be number of UMIs for '--umi' with '--scoring-method coverage'?

  #31 opened 5 years ago by Puriney
  1

• Any manuscript to further elaborate on how vartrix works in details?

  #30 opened 5 years ago by Puriney
  0