Data and Code from the "Biology Meets Subduction" microbial diversity paper across the subduction zone of Costa Rica
preprint_release v0.9
This repository contains the raw data and the code used to analyze the interaction between the 16S rRNA microbial diversity and geochemistry across the hot spring of Costa Rica collected in the framework of the "Biology Meets Subductions" project, financed by the Deep Carbon Observatory and the Alfred P. Sloan Foundation.
Data analyses have been performed using the freely available open source sfotware Mothur (https://www.mothur.org/) and the R Statistical Software [https://www.R-project.org/] (R development core team, 2010).
The file bms_mothur.txt contains the mothus commands, while the file SubductCR_16S_final_analysis.r cotains the R code used for the analysis. The raw sequences can be obtained from the NCBI SRA archive under Bioproject number SUB6412893 [Avaiting NCBI Confirmation] while the file SubductCR_bac_sample_table.csv contains all the other environmental data.
The preprint of the paper can be found on EarthXiv as preprint at www.
For questions please contact me.
The code and data are released under the Creative Commons Licence Attribution 4.0 International (CC BY 4.0). Ream more about his license at https://creativecommons.org/licenses/by/4.0/.
