Pinned Repositories
16S_analysis_pipelines
16S_Tutorial
amplicon_processing
Scripts and workflows for MiSeq amplicon processing
AstrobioMike.github.io
Site to help biologists wade their way into bioinformatics.
binderQ2
Specifying a conda environment with `environment.yml`
Centralia_16S_analysis
Community analysis for 16S rRNA Tag-sequencing results using QIIME
dadaist2
🎨 dadaist2 - Highway to R
dadaWRAP
dgiovannelli.github.io
docs
Source repository for https://docs.qiime2.org
Luponsky's Repositories
Luponsky/amplicon_processing
Scripts and workflows for MiSeq amplicon processing
Luponsky/dadaist2
🎨 dadaist2 - Highway to R
Luponsky/16S_analysis_pipelines
Luponsky/16S_Tutorial
Luponsky/AstrobioMike.github.io
Site to help biologists wade their way into bioinformatics.
Luponsky/binderQ2
Specifying a conda environment with `environment.yml`
Luponsky/Centralia_16S_analysis
Community analysis for 16S rRNA Tag-sequencing results using QIIME
Luponsky/dadaWRAP
Luponsky/dgiovannelli.github.io
Luponsky/docs
Source repository for https://docs.qiime2.org
Luponsky/EMBOMicroCom
Metabolic modeling tutorial for EMBO practical course: Metabolite and species dynamics in microbial communities
Luponsky/FastQC
Luponsky/Github
Luponsky/GitSavvy
Full git and GitHub integration with Sublime Text 3.
Luponsky/learn_bash
Toy files and training material to introduce Linux to molecular biologists
Luponsky/LongRead_tutorials
Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
Luponsky/masame
Code to run the shiny functions for the MASAME suite
Luponsky/Mats-Blue-Hole-Maldives
Genome-resolved metagenomics revealed novel microbial taxa and distinct metabolism from giant filamentous microbial mats inhabiting anoxic deep reefs of a Maldivian Blue Hole
Luponsky/MicrobiolMarina2023
Marine Microbiology Practical Course 2023
Luponsky/microbiome_helper
A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.
Luponsky/phyloseq
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
Luponsky/rda_varpart_ggplot2
Script para gráficos dos resultados da RDA e do varpart do pacote `vegan`
Luponsky/SendScriptWhatsApp
Script para enviar o Roteiro do filme Shrek, linha por linha, no WhatsApp
Luponsky/spades
SPAdes Genome Assembler
Luponsky/SubductCR_16S-diversity
Data and analysis file of the Biology Meets Subduction paper related to the 16S rRNA Bacterial diversity along the subduction zone of Costa Rica
Luponsky/Supplementary-Code
Luponsky/visual16S
This is a R package for 16S visualization. Including dada2 reads track, stacked bar plot, alpha diversity, beta diversity and log2 fold change.
Luponsky/workshopAI
Coding with ChatGPT workshop
Luponsky/wrangling-genomics
Lesson for wrangling genomics data