A list of example files to start using the Linux Command Line interface (CLI). Originally prepared for Bash for Bioinformatics training
See the Wiki in this repository.
| Date | Description |
|---|---|
| 2019-12-04 | Added FASTQ files, Updated README maker with links |
| 2019-12-03 | Refactoring the companion website (now using github wiki). |
| 2019-02-20 | Readme file generator added (_readme_maker/make_readme) |
| 2018-10-20 | Added a "misc" subdirectory with examples taken from another training set |
| 2018-03-05 | Package updated, "files" directory added |
| 2018-02-29 | First release |
📁 misc 12M
This is an extra subdirectory, it contains its own README file for details
📁 archives 16K
Archives to test decompression tools
📁 scripts 24K
📁 phage 2.3M
A set of files to test parsing of bioinformatics format, mostly related to PhiX phage.
- GCF_000840245.1_ViralProj14204
- README.txt
- annotation_hashes.txt
- assembly_status.txt
- md5checksums.txt
- vir_assembly_report.txt
- vir_assembly_stats.txt
- vir_cds_from_genomic.fna
- vir_feature_count.txt
- vir_feature_table.txt
- vir_genomic.fna
- vir_genomic.gbff
- vir_genomic.gff
- vir_protein.faa
- vir_protein.gpff
- vir_reads1.fq
- vir_reads2.fq
- vir_rna_from_genomic.fna
- vir_translated_cds.faa
📁 files 3.5M
Common file formats, both binary (e.g. PNG image) and text files (e.g. CSV). A PDF document is included to see how less can also handle them.