Luponsky's Stars
McAllister-NOAA/REVAMP
REVAMP: Rapid Exploration and Visualization through an Automated Metabarcoding Pipeline
a-h-b/dadasnake
Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake
gexijin/shinygo
jiarong/VirSorter2
customizable pipeline to identify viral sequences from (meta)genomic data
WrightonLabCSU/DRAM
Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
wbazant/CORRAL
allind/EukDetect
madoui/Practical_courses_PopGen_meta
terrimporter/CO1Classifier
This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequences.
hariszaf/pema
PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S rRNA, ITS and COI marker genes
hussius/deeplearning-biology
A list of deep learning implementations in biology
Gibbsdavidl/CatterPlots
Did you ever wish you could make scatter plots with cat shaped points? Now you can!
adamkucharski/scrapR
Extract raw underlying data from PDF figures
rmcelreath/stat_rethinking_2024
wfxr/csview
📠 Pretty and fast csv viewer for cli with cjk/emoji support.
RichieJu520/Co-occurrence_Network_Analysis
R and python scripts for correlation-based network analysis
stephenturner/oneliners
Useful bash one-liners for bioinformatics.
rmcelreath/stat_rethinking_2022
Statistical Rethinking course winter 2022
SusanneWalden/OnthePhenologyofProtists
Code and plots for the paper of Walden et al., 2021, https://doi.org/10.1093/femsec/fiab081
leondap/recluster
aMG-tk/get-ancient-vf
A simple tool to find virulence factors in ancient metagenomes
tobiasgf/lulu
r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)
DamienFinn/MD
Metagenomic diversity index calculator and example .faa contig data.
cultivarium/MicrobeMod
A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing
fanglab/nanodisco
nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nanopore sequencing.
ArtRand/signalAlign
HMM-HDP models for MinION signal alignments
RaverJay/CholerAegon
Pipeline for assembly and antimicrobial resistance gene detection
gexijin/RTutor
Chat with your data via AI. https://RTutor.ai
metaGmetapop/metapop
A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations
Matt-Fontes/SendScriptWhatsApp
Script para enviar o Roteiro do filme Shrek, linha por linha, no WhatsApp