Luponsky's Stars
gexijin/RTutor
Chat with your data via AI. https://RTutor.ai
metaGmetapop/metapop
A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations
Matt-Fontes/SendScriptWhatsApp
Script para enviar o Roteiro do filme Shrek, linha por linha, no WhatsApp
moshi4/COGclassifier
A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
ArcticMicrobialEcology/candidatus-nitrosopolaris
ArcticMicrobialEcology/Kilpisjarvi-MAGs
bluenote-1577/skani
Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.
jsgounot/metagenomic-pipelines
ziyewang/COMEBin
rotheconrad/KEGGDecoder-binder
metabolic heatmap
bjtully/BioData
All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")
iqtree/iqtree2
NEW location of IQ-TREE software for efficient phylogenomic software by maximum likelihood http://www.iqtree.org
hoelzer-lab/ribap
A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs
zheminzhou/PEPPAN
Phylogeny Enhanded Prediction of PAN-genome
WatsonLab/MAGpy
Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)
aaronmussig/PhyloDM
Efficient calculation of phylogenetic distance matrices.
wwood/singlem
Novelty-inclusive microbial community profiling of shotgun metagenomes
LebeerLab/caseiGroup_mSystems_pipeline
geronimp/enrichM
Toolbox for comparative genomics of MAGs
jmlondon/pathroutr
R package for routing tracks around barrier polygons
eurostat/searoute
Compute shortest maritime routes between ports
alekseyzimin/masurca
SchlossLab/mikropml
User-Friendly R Package for Supervised Machine Learning Pipelines
vrmarcelino/MetaModels
Scripts to analyse metagenome-wide metabolic models
shenwei356/csvtk
A cross-platform, efficient and practical CSV/TSV toolkit in Golang
aMG-tk/taxdb-integration
format NCBI refseq genomes for non-prokaryotic taxa to integrate with GTDB
franciscozorrilla/EMBOMicroCom
Metabolic modeling tutorial for EMBO practical course: Metabolite and species dynamics in microbial communities 2022
opencobra/memote
memote – the genome-scale metabolic model test suite
GeoGenetics/aeGenomicsCourse2023
franciscozorrilla/SymbNET
Teaching materials for SymbNET course: from MAGs to GEMs