Luponsky's Stars
Luponsky/amplicon_processing
Scripts and workflows for MiSeq amplicon processing
NadjaKry/WGS_pipeline
Bacterial whole genome sequencing (WGS) analysis
xtmtd/PLWS
Phylogenomics from Low-coverage Whole-genome Sequencing
nmquijada/tormes
Making whole bacterial genome sequencing data analysis easy
MHH-RCUG/Wochenende
Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3
ying14/yingtools2
Ying's tools for analysis, with particular focus on microbiome data
DeniRibicic/bioinformatics
Bash scripts for internal use
DeniRibicic/q2ONT
Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2
denysdovhan/bash-handbook
:book: For those who wanna learn Bash
Idnan/bash-guide
A guide to learn bash
ropensci/suppdata
Grabbing SUPPlementary DATA in R
sdras/awesome-actions
A curated list of awesome actions to use on GitHub
LangilleLab/microbiome_helper
A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.