MGI-tech-bioinformatics/DNBelab_C_Series_HT_scRNA-analysis-software

Issues

• 单细胞数据结果文件

  #119 opened 2 months ago by ldan999
  2

• scRNA run结果解读

  #118 opened 2 months ago by ldan999
  3

• dnbc4tools run 报错 Error code: SAW-A10187

  #92 opened 4 months ago by sheny-bio
  8

• 建立参考基因组索引问题

  #108 opened 3 months ago by ldan999
  3

• Running the main workflow报错

  #116 opened 3 months ago by ldan999
  8

• dnbc4tools installation issue

  #117 opened 3 months ago by ErrolTian
  3

• ERROR - similarity: main.c:369: create_index_array: Assertion `((infos)->n) > 0' failed.

  #94 opened 4 months ago by yjzhang1020
  14

• How Does the Software Determine Beads Originate from the Same Cell?

  #113 opened 3 months ago by lgchen-git
  3

• 关于dnbc4tools vdj run运行时间过长的咨询

  #114 opened 3 months ago by biginfor
  9

• 细胞数目和质量都很高

  #115 opened 3 months ago by LJIGDBLL
  5

• Obtain transcript count matrics

  #110 opened 3 months ago by hejian41
  4

• dnbc4tools4下载报错

  #112 opened 3 months ago by ldan999
  2

• C4单细胞上游分析样本存在多个文件

  #101 opened 3 months ago by ldan999
  6

• 来自不同分析版本的样品

  #98 opened 3 months ago by LJIGDBLL
  2

• dnbc4toolsv2.0.7 install

  #111 opened 3 months ago by qwccccc
  1

• How to adjust `forceCellNum` for Optimal Cell Yield and Accuracy in the Pipline "DNBelab C4 scRNA-seq v2"

  #103 opened 3 months ago by nh-codem
  3

• Concerns Regarding "Sequencing Saturation" in the "DNBelab C4 scRNA-seq v2" Workflow Reports

  #104 opened 3 months ago by nh-codem
  2

• Concerns Regarding Differences Between V2.1.2 and V2.0.7 Pipelines

  #109 opened 3 months ago by nh-codem
  2

• error: the following arguments are required: --name, --cDNAfastq1, --cDNAfastq2, --oligofastq1, --oligofastq2, --genomeDir

  #107 opened 3 months ago by ldan999
  2

• 构建参考基因组索引所需内存

  #106 opened 3 months ago by ldan999
  2

• 关于软件是否存在checkpoint机制的询问

  #105 opened 3 months ago by biginfor
  4

• dnbc4tools rna multi 不产生任何结果，但同时没有任何报错

  #102 opened 3 months ago by biginfor
  2

• 如何使用 scanpy 读取 raw_matrix下的文件？

  #100 opened 3 months ago by zhoutianrui-tongji
  4

• Output matrix with gene_id

  #99 opened 3 months ago by ShuyangXu
  1

• SAW-A10186 中途自动终止并报错。

  #97 opened 3 months ago by LJIGDBLL
  1

• C4单细胞上游分析提问

  #96 opened 3 months ago by hswl1314
  2

• A question about multiple files of one sample

  #87 opened 5 months ago by NJU-Bio-Info
  9

• 请问如何将bam文件进行上游分析

  #95 opened 4 months ago by GGG622188
  3

• NoDataError: empty CSV

  #93 opened 4 months ago by peipp410
  6

• add Custom gene to Reference, but filtered out in GTF file after mkgtf

  #91 opened 4 months ago by zclecle2
  4

• DNBSEQ-T7 platform demultiplexing

  #90 opened 4 months ago by Maple-sakura
  4

• 我该如何将结果文件读取到 python 中进行后续分析（包括 UMAP 和细胞类型注释）？（Scanpy）

  #89 opened 4 months ago by zhoutianrui-tongji
  2

• filter matrix 和 raw matrix有什么区别？

  #88 opened 4 months ago by ultraypy
  3

• ERROR when running dnbc4tools rna

  #72 opened 5 months ago by kobeho24
  13

• dnbc4tools rna run 的时候报错：Signals.SIGABRT: 6

  #83 opened 5 months ago by YaoQiong1127
  18

• 请问注释的原理是什么

  #81 opened 5 months ago by ultraypy
  1

• How to add a marker gene for building a custom reference for dnbc4tools?

  #85 opened 5 months ago by jiangjasson
  4

• ImportError:undefined symbol: BrotliSharedDictionaryDestroyInstance

  #84 opened 5 months ago by jiangjasson
  3

• scATAC version 2.1.2 SIGNALS error description

  #82 opened 5 months ago by lishuangshuang0616
  7

• subprocess.CalledProcessError

  #80 opened 6 months ago by hullv
  5

• subprocess.CalledProcessError:

  #79 opened 6 months ago by hullv
  0

• how would you convert the output of dnbc2tools to count matrix

  #78 opened 6 months ago by sherry1000001
  8

• Command failed with exit code 255

  #77 opened 6 months ago by Arknights2
  9

• Exception: The chemistry and darkreaction are unable to be automatically determined.

  #76 opened 6 months ago by Xxhongs
  2

• Error in barcodeRanks(t(m), lower = 0.005) : insufficient unique points for computing knee/inflection points 2024-04-24

  #69 opened 6 months ago by hullv
  9

• Saturation problem

  #73 opened 6 months ago by hullv
  9

• dnbc4tools rna run: Unable to find custom marker genes in the 02.count/features.tsv.gz file even they are appeared in the 01.data/final_sorted.bam

  #74 opened 6 months ago by zebrafishCC
  11

• 使用PE100模式测序是否适用DNBc4tools

  #75 opened 6 months ago by Tc940417
  2

• RNA velocity分析

  #71 opened 7 months ago by tyyl622
  6

• 可以使用Soupx对dnbc4tools产生的raw_matrix和filter_matrix进行去环境RNA污染吗？

  #68 opened 7 months ago by kjHuoo
  2