Pinned Repositories
pancanmafmerge
A repo for code specifically tailored to the merger of the TCGA PanCan VCF (per-caller) files into a MAF file. This repository borrows from code available in other repositories and has some custom code to handle the merger. The project's main purpose is simply to do the merge for this one project and therefore has no features to make it more generic or maintainable beyond this goal.
hotspot3d
3D hotspot mutation proximity analysis tool
C3PO_polygenic
Basic linear polygenic risk score to predict protein levels in CPTAC
CircosBuilding
CleanUpWelmLab
MyFigures
Figures I've made for science
pdxo_2021_paper
Code availability and reproducibility for Guillen et al. 2021
PDxO_DrugScreens
Processes and analyzes automated drug-screen data for PDxOs
pfb2018
vcf2maf
Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
MHBailey's Repositories
MHBailey/CircosBuilding
MHBailey/C3PO_polygenic
Basic linear polygenic risk score to predict protein levels in CPTAC
MHBailey/CleanUpWelmLab
MHBailey/MyFigures
Figures I've made for science
MHBailey/pdxo_2021_paper
Code availability and reproducibility for Guillen et al. 2021
MHBailey/PDxO_DrugScreens
Processes and analyzes automated drug-screen data for PDxOs
MHBailey/pfb2018
MHBailey/vcf2maf
Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms