MRCIEU/Lifecourse-GWAS

Issues

• flashpca compilation

  #32 opened 3 months ago by explodecomputer
  0

• Add age covariate to the lifestage phenotype categories

  #31 opened 6 months ago by explodecomputer
  0

• Phenotype definitions list?

  #29 opened 8 months ago by MichelNivard
  0

• Alphabetical effect allele at the summary stage rather than individual stage

  #27 opened 8 months ago by explodecomputer
  0

• Handle GCTA errors when using sparse GRM

  #25 opened 10 months ago by explodecomputer
  0

• Implement Box-m LD collection to check differential LD

  #24 opened 10 months ago by explodecomputer
  0

• Integrating 02 with 01 and 03

  #22 opened 10 months ago by explodecomputer
  0

• Hackathon

  #12 opened 10 months ago by explodecomputer
  0

• Draft phenotype summarising script

  #3 opened 10 months ago by explodecomputer
  0

• Calculate PCs for analysis

  #2 opened 10 months ago by explodecomputer
  0

• Determine ancestry

  #1 opened 10 months ago by explodecomputer
  0

• genetics - generate PCs

  #7 opened 10 months ago by explodecomputer
  1

• Detect relateds

  #8 opened 10 months ago by explodecomputer
  0

• Complete GWAS step

  #13 opened a year ago by explodecomputer
  3

• quickly format ALSPAC data

  #20 opened a year ago by gracemarionpower
  0

• Organise variant IDs

  #15 opened a year ago by explodecomputer
  0

• organsie genotype data

  #17 opened a year ago by GenevieveLeyden
  0

• Format ALSPAC genotype data

  #14 opened a year ago by GenevieveLeyden
  0

• organise_phenotypes - outlier detection and removal

  #4 opened a year ago by explodecomputer
  1

• genetics - detect ancestry

  #6 opened a year ago by explodecomputer
  1