MRCIEU/opengwas

OpenGWAS

Deployment

• Opengwas-api https://github.com/MRCIEU/opengwas-api
• https://ieugit-scmv-d0.epi.bris.ac.uk/ml18692/opengwas-api-internal
• https://ieugit-scmv-d0.epi.bris.ac.uk/cmtsa/ieu-gwas-database
• Elasticsearch database stuff

Data management

• https://github.com/MRCIEU/opengwas-manual-uploads
• https://github.com/MRCIEU/igd-elasticsearch / https://github.com/MRCIEU/OpenGWAS-Elasticsearch-HPC
• https://github.com/MRCIEU/gwas2vcf
• https://github.com/MRCIEU/gwas2vcfweb
• https://github.com/MRCIEU/gwas_processing
• https://github.com/MRCIEU/opengwas-requests
• https://github.com/MRCIEU/opengwas-reports
• https://github.com/MRCIEU/GwasDataImport
• https://ieugit-scmv-d0.epi.bris.ac.uk/gh13047/igd-metadata
• https://github.com/MRCIEU/CheckSumStats
• https://github.com/MRCIEU/IGD-elasticsearch
• https://github.com/MRCIEU/gwas-vcf-specification
• https://github.com/MRCIEU/gwas_processing

Data access

• https://github.com/MRCIEU/ieugwasr
• https://github.com/MRCIEU/ieugwaspy
• https://github.com/MRCIEU/pygwasvcf
• https://github.com/MRCIEU/gwasvcf

Analytical tools

• https://github.com/MRCIEU/gwasglue
• https://github.com/MRCIEU/TwoSampleMR
• https://github.com/MRCIEU/mr-base-shiny

Applied

• mr-eve
• coloc-eve

Analytics

• OCI elastic/Kibana ssh -f -N -L 5602:132.226.129.208:5601 ieu-db-interface.epi.bris.ac.uk and then open http://localhost:5602
• MR-Base shiny on google analytics - https://analytics.google.com/analytics/web/#/report-home/a64755036w117456758p122852687
• gwas.mrcieu.ac.uk on google analytics - https://analytics.google.com/analytics/web/#/report-home/a143778740w205196691p198413597