MakerTobey
I'm a bioengineer researching microbiomes by developing microfluidic methods for high-throughput single cell multi-omics screens, using Open Hardware automation
Institute for Biological and Medical Engineering, Universidad Católica de ChileSantiago, Chile
Pinned Repositories
napari-LatAm-workshop-2023
Napari training material for a workshop by the CZI funded initiatives LIBRE hub, Napari, and several amazing volunteers
Data-extraction-from-crossection-TEM-images-of-biophotonic-structures
This collection of scripts enables the extraction of shapes and parameters from crossection-TEM images of semi-ordered (2d) surface structures e.g. of biological samples, such as often found in structural colours (biophotonics). Non-surface edges were removed manually. The undulation caused by the shape of underlying cells was removed using a low-order polynomial fit. Pixels of consecutive surface pattern were sorted, scaled and noise filtered, before local extrema were detected.
e-beam_lithography_randomised_lines
Script to create randomised lines (gaussian and truncated) stacked to cover large area samples for e-beam lithography (generates con and ccc files). Three exposure times can be set for dual-height structures.
Modern-Statistics-for-Modern-Biology-labs
Chapter files and labs code for the course (EMBL and Stanford) to the book.
OpenMicrofluidics
Review, test and development of open source hardware approaches to microfluidic research equipment and ultra-high throughput bio-experimentation.
Optical-goniometer-analysis
Reading and plotting scattering angle resolved data of optical spectra
droplet-sorter-master
Master repository that documents how the different parts come together of the open source hardware Fluorescence Activated (Microfluidic) Droplet Sorter (FADS).
droplet-sorter-optomechanics
Design of positioning, lasers, filters, detectors, fixtures for open droplet sorting
droplet-sorting-FPGA-controller
IT setup for realtime analysis of microfluidic droplets with FPGA board (RedPitaya) based on python pyprl library
modular-microfluidics-workstation-controller
Repository for the development of the modular parts of a free and open source microfluidic workstation.
MakerTobey's Repositories
MakerTobey/OpenMicrofluidics
Review, test and development of open source hardware approaches to microfluidic research equipment and ultra-high throughput bio-experimentation.
MakerTobey/Optical-goniometer-analysis
Reading and plotting scattering angle resolved data of optical spectra
MakerTobey/Modern-Statistics-for-Modern-Biology-labs
Chapter files and labs code for the course (EMBL and Stanford) to the book.
MakerTobey/HoneyPi
Installer for a smart IoT beehive scale based on Raspberry Pi 🐝
MakerTobey/Lumerical-simulations-for-cluster
Analysis scripts for FDTD simulation results (computed with the software Lumerical) on controlled disorder in rectangular reflection gratings.
MakerTobey/PlotBioelectrochemistryData
Matlab scripts and functions used to analyse electrochemistry data from biophotovoltaic devices.
MakerTobey/PlotCyclicVoltammetryData
Matlab scripts and functions used to analyse electrochemistry data (cyclic voltammetry) from biophotovoltaic devices.
MakerTobey/tmm
transfer-matrix method for optics of thin and thick multilayer films
MakerTobey/Scientometric_analysis
Analysis of academic publication networks based on the R package bibliometrix
MakerTobey/AKERKitSourceFilePacks
Get ALL of the AKER Kit source file packs. If you love them, don't forget to tell us about it - aaron@akerkits.com
MakerTobey/Biomaker-s-PRC
Community rebuild and varyation of the "Open" PRC projects as Open Science Hardware
MakerTobey/Bixel_Open_Labware
Draft documentation
MakerTobey/curso-IBM2026-git
MakerTobey/Data-carpentry-course-R
My R training material
MakerTobey/Impedance-analysis-scripts
MakerTobey/literature-analysis-OSH-technology-access-2022
MakerTobey/Lumerical-simulations-PC
Analysis scripts for FDTD simulation results (computed with the software Lumerical) on controlled disorder in rectangular reflection gratings.
MakerTobey/makertobey.github.io
Test of layout for my academic webpage.
MakerTobey/Miriam
Miriam is an open-source isothermal amplification platform
MakerTobey/mozfest-repo-template
Your project description goes here
MakerTobey/open-high-throughput-imaging
Computational imaging and processing project and related open hardware resources
MakerTobey/openflexure_microscope
A 3D printable microscope and translation stage
MakerTobey/Optics-Simulation-Transfer-Matrix-Approach
Work in progress
MakerTobey/PlotLightSourceSpectra
MakerTobey/Plotting_FADS_data_Merten
R script, datasets and example plot of Fluorescence Activated Droplet Sorting (FADS) data from the EMBL Merten Lab droplet sorting workstation.
MakerTobey/sorter-code
Code for droplet sorting station.
MakerTobey/standard-readme
Standard Readme Style
MakerTobey/UC2-GIT
Respository for Open-Science modular microscope system.
MakerTobey/uFluid
Arduino based pressure (and flow rate) controll system for open source microfluidic applications. Released under the CERN Open Hardware Licence.
MakerTobey/valve-control
Use Arduino Uno to control solenoid valves