MakerTobey/Data-extraction-from-crossection-TEM-images-of-biophotonic-structures

This collection of scripts enables the extraction of shapes and parameters from crossection-TEM images of semi-ordered (2d) surface structures e.g. of biological samples, such as often found in structural colours (biophotonics). Non-surface edges were removed manually. The undulation caused by the shape of underlying cells was removed using a low-order polynomial fit. Pixels of consecutive surface pattern were sorted, scaled and noise filtered, before local extrema were detected.

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