Pinned Repositories
alphadia
modular & open DIA search
alphamap
An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.
alphapept
A modular, python-based framework for mass spectrometry. Powered by nbdev.
alphapeptdeep
Deep learning framework for proteomics
alphapeptstats
Python Package for the downstream analysis of mass-spectrometry-based proteomics data
alphatims
An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck Institute of Biochemistry.
CKG
Clinical Knowledge Graph (CKG) is a platform with twofold objective: 1) build a graph database with experimental data and data imported from diverse biomedical databases 2) automate knowledge discovery making use of all the information contained in the graph
directlfq
Fast and accurate label-free quantification for small and very large numbers of proteomes
ProteomicsVisualization
This is a collection of minimal code to visualize various aspects of proteomics data.
scPortrait
Mann Labs's Repositories
MannLabs/alphapept
A modular, python-based framework for mass spectrometry. Powered by nbdev.
MannLabs/alphapeptdeep
Deep learning framework for proteomics
MannLabs/alphatims
An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck Institute of Biochemistry.
MannLabs/alphamap
An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.
MannLabs/alphapeptstats
Python Package for the downstream analysis of mass-spectrometry-based proteomics data
MannLabs/alphadia
modular & open DIA search
MannLabs/directlfq
Fast and accurate label-free quantification for small and very large numbers of proteomes
MannLabs/scPortrait
MannLabs/alphabase
Infrastructure of AlphaX ecosystem
MannLabs/OmicLearn
🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data
MannLabs/alphaviz
AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquired with Bruker instrument.
MannLabs/structuremap
Python package for investigating the structural context of PTMs
MannLabs/timsrust
MannLabs/pydiaid
An open-source Python package for dia-PASEF methods with Automated Isolation Design (py_diAID) from the Mann Labs at the Max Planck Institute of Biochemistry.
MannLabs/alpharaw
An open-source Python package to unify raw MS data accession and storage.
MannLabs/PeptDeep-HLA
DL model to predict HLA peptide presentation
MannLabs/structuremap_analysis
Analysis workflow for investigating the structural context of PTMs
MannLabs/single-cell-DVP
MannLabs/SPARCSpy
MannLabs/py-lmd
MannLabs/SPARCStools
python tools to perform data parsing and image stitching on microscopy data
MannLabs/refquant
Reference-channel based quantification for mDIA data
MannLabs/alphasynchro
MannLabs/scPortrait-notebooks
MannLabs/timspeak
MannLabs/MitoPhos
MitoPhos data analysis notebooks
MannLabs/slurm_scripts
MannLabs/SPARCS_pub_figures
Notebook and data to recreate figures from SPARCS manuscript
MannLabs/alphashared
Shared non-production code for AlphaX packages
MannLabs/streamlit_peptide_overlay
An example streamlit application that allows plotting on a protein sequence.