MannLabs/SPARCSpy

Issues

• Save filtered cell plots when debug = True in Segmentation Pipeline

  #7 opened 7 months ago by sophiamaedler
  0

• Improve Log Output when Segmenting Images

  #4 opened 7 months ago by sophiamaedler
  2

• Error Message segmentation + extraction + classification pipeline

  #9 opened 7 months ago by sophiamaedler
  0

• Cellpose Segmentation generates incomplete masks

  #35 opened 8 months ago by sophiamaedler
  0

• Cellpose Filtering Workflow Bug

  #34 opened 8 months ago by sophiamaedler
  0

• Accelerate segmentation postprocessing with sparse matrices

  #31 opened 10 months ago by tatyana-perlova
  1

• Segmentation not possible in TimecourseProject if `overwrite=True`

  #32 opened 9 months ago by namsaraeva
  0

• Check folder structure when loading input images

  #28 opened a year ago by namsaraeva
  0

• Documentation Improvements

  #5 opened a year ago by sophiamaedler
  1

• Improvements Example Workflow Documentation

  #22 opened a year ago by sophiamaedler
  0

• replace WGA with cytosol to make code more standardised

  #10 opened a year ago by sophiamaedler
  1

• write function to cleanup "excess" data

  #11 opened 3 years ago by sophiamaedler
  2

• recalculates segmentation even though segmentation has completed if parameters change to intermediate = True

  #8 opened 3 years ago by sophiamaedler
  1

• Context Class for Logable which allows redirecting stdout to log

  #6 opened 3 years ago by GeorgWa
  0

• Code Redundancy in WGASegmentation

  #2 opened 3 years ago by sophiamaedler
  0

• Check types in Dataset and for accessory datasets

  #3 opened 3 years ago by GeorgWa
  0

• Pip install fails on linux

  #1 opened 3 years ago by sophiamaedler
  1