Pinned Repositories
py-lmd
SPARCS_pub_figures
Notebook and data to recreate figures from SPARCS manuscript
SPARCSpy
SPARCStools
python tools to perform data parsing and image stitching on microscopy data
aicsimageio
Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
alphabase
Infrastructure of AlphaX ecosystem
ashlar
ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
cellpose
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
napari-cellselect
segment-anything
The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.
sophiamaedler's Repositories
sophiamaedler/aicsimageio
Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
sophiamaedler/alphabase
Infrastructure of AlphaX ecosystem
sophiamaedler/ashlar
ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
sophiamaedler/cellpose
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
sophiamaedler/napari-cellselect
sophiamaedler/segment-anything
The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.
sophiamaedler/venn_labelled
Small python package to plot Venn diagrams where sets of strings are plotted in each segment of the Venn diagram.
sophiamaedler/spatialdata
An open and interoperable data framework for spatial omics data