Issues
- 5
Topics to Cell types
#52 opened by Peter-bbh - 7
Question about SPOTlight_deconvolution_analysis
#66 opened by hoon2577 - 7
Spot composition visualization
#27 opened by WesDe - 3
error when using trainNMF function
#62 opened by sarashen2017 - 2
Issues using plotSpatialScatterpie() with Seurat
#58 opened by gpersad - 2
Questions concerning the workflow of SPOTlight
#57 opened by JJBio - 5
Questions about the workflow of SPOTlight
#65 opened by YMSWhuang - 10
Insufficient number of features shared between single-cell and mixture dataset.
#44 opened by rocketeer1998 - 5
- 3
train_nmf run time
#14 opened by stephenwilliams22 - 4
Spots are shifted from the image
#9 opened by onahman - 2
- 0
Seurat Object Issues
#63 opened by Rslat - 2
Error: Couldn't extract image coordinates
#60 opened by sokratiag - 2
Assay Parameter not working in SPOTlight function
#59 opened by czackl - 1
- 1
install error
#53 opened by sailseem - 3
Question about the function "test_spot_fun"
#17 opened by leihouyeung - 2
Does the new spotlight have an improvement over the old in the core algorithm part?
#55 opened by wfxcode - 1
Benchmarking SPOTlight
#12 opened by vitkl - 2
Interpretation heatmap cell interactions
#42 opened by astrid12345 - 6
- 7
- 0
- 1
A typo in updated vignette
#43 opened by rocketeer1998 - 3
Error: 'spotlight_deconvolution' is not an exported object from 'namespace:SPOTlight'
#45 opened by larouchej - 1
- 1
applying SPOTLight on multiple ST samples
#33 opened by skim245 - 2
Spatial_scatterpie mutate() error
#36 opened by WesDe - 5
spotlight_deconvolution function error
#39 opened by ccomo0730 - 2
- 1
spatial interaction graph - plotting error
#26 opened by Loudon85 - 1
get_spatial_interaction_graph_fun.R
#29 opened by cadyyuheng - 1
Cell overabundance in deconvolution
#30 opened by wakelin-g - 3
Question for multiple ST samples
#32 opened by astrid12345 - 2
Mouse vs human gene symbols
#31 opened by astrid12345 - 2
- 1
spatial_scatterpie does not work
#22 opened by xuhanshi - 0
- 3
Error in installation
#24 opened by Roopali24 - 2
spotlight_deconvolution error
#23 opened by sarahcooper22 - 1
Error: object 'count_mtrx' not found
#21 opened by ph329 - 2
- 2
a new error encountered
#19 opened by sengao86 - 1
- 0
installation error
#16 opened by tctaochen - 2
spatial_scatterpie - col_df argument
#15 opened by MartaCasado - 3
Question related to normalization
#10 opened by JoyOtten - 5
- 1