This module is used to build and maintain a database of RNAseq tracks. - The Mysql schema is in sql/tables.sql and documented in docs/rnaseqdb_doc.html - The modules are in lib/ - Various scripts are in the scripts folder to: - Add species - Add RNA-Seq from SRA or from local files - Annotate the metadata (e.g. create groups of tracks) - Retrieve tracks Special prerequisite: * Bio::EnsEMBL::TrackHub from https://github.com/MatBarba/EGTrackHub * Bio::EnsEMBL::ENA INSTALL Either put script in a dedicated dir and update PERL5LIB (lib/) and PATH (scripts/), or install the package: # Prepare and test perl makeFile.PL make make test # Install make install # Cleanup make veryclean NOTE1: even if you do not install the package, it is best to perform the 3 first steps to check for dependencies and run the tests. NOTE2: The tests mainly rely on an access to a database: rename t/RNAseqDB/db_conf.example to t/RNAseqDB/db_conf and change its content appropriately to be able to test properly. To build the MANIFEST easily: perl -MExtUtils::Manifest -e 'ExtUtils::Manifest::mkmanifest()'