MathOnco/NeoPredPipe
Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.
PythonLGPL-3.0
Issues
- 1
- 0
Problem with sample processing for Indels
#34 opened by rschenck - 2
- 2
- 1
Docker version
#42 opened by WuRAFY - 1
Is there any parameter to set up multithreading?
#43 opened by h170607 - 1
- 1
Conversion script for netMHCpan 4.1 output
#41 opened by tucano - 1
NeoRecoPo.py IndexError
#35 opened by XiangweiZhai - 7
the origin of the Expression column in the output when not specifying RNA-seq data
#36 opened by fangfang0906 - 1
NeoRecoPo.py error
#44 opened by h170607 - 1
- 3
Output empty with test data
#38 opened by tucano - 1
Indel not processing correctly
#37 opened by RTCarmo - 2
- 0
Invalid literal error in postprocessing.py
#26 opened by Reda94 - 7
IndexError in MakeTempFastas
#17 opened by wangyqhaha - 2
how to set -c option?
#33 opened by XiangweiZhai - 1
How use NeoPredPipe without HLA information?
#27 opened by liminghao663 - 3
- 1
Wildtype output field
#31 opened by Jprazich2 - 6
Neoantigen burden in mouse
#25 opened by Francesc-Muyas - 1
BindLevel results from %Rank_EL or %Rank_BA
#29 opened by wt12318 - 3
The meaning of some columns
#28 opened by wt12318 - 1
python TabError problem
#24 opened by Xiaohuaniu0032 - 13
multi or single region
#23 opened by beginner984 - 20
NeoRecoPo.py error
#21 opened by xicola7 - 2
Which HLA type file I better to use
#22 opened by beginner984 - 4
nothing in TestRun.neoantigens.txt
#10 opened by axiba053 - 1
What is parameters c(colregions) means?
#11 opened by Tiredbird - 1
Is PeptideMatch necessary?
#12 opened by Tiredbird - 2
TypeII neoantigen detection errors
#19 opened by wangshun1121 - 1
Issue about Running type-II HLA neoantigens
#20 opened by chenyx47 - 1
- 1
The problems I met in the result of MHC-II
#13 opened by Tiredbird - 6
OSError: [Errno 8] Exec format error
#6 opened by qindan2008 - 2
UnboundLocalError: local variable 'genoTypesPresent' referenced before assignment
#1 opened by qindan2008 - 10
- 7
I don't get the results
#15 opened by kkyung412 - 5
- 2
- 4
vcf_manipulate.py
#3 opened by ChengYunazhi - 3
new error in postprocess
#4 opened by ChengYunazhi - 1