Pinned Repositories
aa2atom
Change amino-acidic sequence into counts of atoms: a simple python module.
IsoSpec
Libraries for fine isotopic structure calculator.
LFQBench2
Compare results of protein and peptide searches
masstodon
Search mass spectra for anything you want.
opentims_bruker_bridge
DLL and SO from Bruker.
pep2prot
Infer protein levels from peptide levels.
timsdata
Data for TIMS
timspy
timsr
TimsR: Easy access to timsTOF Pro data from R.
opentims
Open-source C++ and Python module for opening binary timsTOF data files.
MatteoLacki's Repositories
MatteoLacki/masstodon
Search mass spectra for anything you want.
MatteoLacki/timsdata
Data for TIMS
MatteoLacki/aa2atom
Change amino-acidic sequence into counts of atoms: a simple python module.
MatteoLacki/proteome_tools_data
script for calculating things for proteome tools
MatteoLacki/rta
LC-IMS-MS feature alignment and clustering.
MatteoLacki/LFQBench2
Compare results of protein and peptide searches
MatteoLacki/pep2prot
Infer protein levels from peptide levels.
MatteoLacki/chemform
MatteoLacki/docstr2argparse
MatteoLacki/dtpred
nothing like prediction of drift times
MatteoLacki/frargprots
fragmentation of proteins
MatteoLacki/fsfc
Fucking Simple Folder Comparison
MatteoLacki/interface_area_calculator
Calculate the area that the protein occupies on a spherical interface.
MatteoLacki/IsoSpecArticle
MatteoLacki/lab_scripts
Simple scripts used to run the lab.
MatteoLacki/learn_pysockets
Just learning from 'Sockets Tutorial with Python 3' on YT.
MatteoLacki/learn_wavelets
MatteoLacki/lighteffect
MatteoLacki/logbooks
MatteoLacki/masserstein
Tools for analysis of Mass Spectrometry data using the Wasserstein metric
MatteoLacki/msspec
Simple module for mass-spectrometric-data.
MatteoLacki/pep2prot_comparison
MatteoLacki/projectizer2
Set of scripts for dealing with the outputs of Waters Symphony pipeline and adjusting them for use with the IsoQuant software.
MatteoLacki/protein_contaminants
File with contaminants only.
MatteoLacki/rmodel
MatteoLacki/showoff
MatteoLacki/ssdbaiR
simple string db access in R
MatteoLacki/tims
MatteoLacki/timstof_openswath
MatteoLacki/vogt_2020_007
Agent 007 Vogt, year 2020