McHaillet
Molecular biologist that got hooked on computing science and especially image processing. Doing a PhD in cryo-ET: trying to detect proteins in high noise!
Utrecht University
Pinned Repositories
a-trous-wavelet-3d
3D wavelet decomposition in python
aoc2021
learning rust with aoc2021
AoC2022
AoC2023
Solution for Advent of Code 2023
blik
Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.
effect-mblogit
Calculate confidence intervals around mblogit predictions
extractor
Deep-learning position extraction from score maps
micrograph-modeller
Simulation of electron microscopy tilt- and frame-series, focused on modelling whole samples
ribosome-membrane-orientation
Analysis of cryo-ET tomograms where ribosome orientations are plotted with respect to membrane segmentations.
pytom-match-pick
GPU template matching for cryo-ET
McHaillet's Repositories
McHaillet/micrograph-modeller
Simulation of electron microscopy tilt- and frame-series, focused on modelling whole samples
McHaillet/effect-mblogit
Calculate confidence intervals around mblogit predictions
McHaillet/extractor
Deep-learning position extraction from score maps
McHaillet/ribosome-membrane-orientation
Analysis of cryo-ET tomograms where ribosome orientations are plotted with respect to membrane segmentations.
McHaillet/a-trous-wavelet-3d
3D wavelet decomposition in python
McHaillet/aoc2021
learning rust with aoc2021
McHaillet/AoC2022
McHaillet/AoC2023
Solution for Advent of Code 2023
McHaillet/blik
Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.
McHaillet/cryocare-from-movies
Automatically processes data from a folder with raw tifs and mdocs to cryocare denoised tomograms.
McHaillet/cryoCARE_pip
PIP package of cryoCARE
McHaillet/libtilt
Image processing for cryo-electron microscopy in PyTorch
McHaillet/polysome-stats
Library of functions for polysome analysis with example jupyter notebooks
McHaillet/PyTom
PyTom software for cryo-tomogram processing
McHaillet/pytom-template-matching-gpu
Only GPU template matching from the PyTOM toolbox
McHaillet/PyTomPrivate
Development repository
McHaillet/PyTomUnitTests
Repo for large data files
McHaillet/SBC-scripts
This repository keeps tracks of the internal scripts of the SBC group.
McHaillet/tomotools
Scripts to make cryo-electron tomography a bit easier
McHaillet/voko
Administration and automation for VOKO
McHaillet/voltools
CUDA-accelerated texture memory 3D affine transformations with numpy/cupy