Pinned Repositories
Akwaboah-hipsc-model
This repository contains code and supplementary material for our computational hiPSC-CM model.
bnglonlat
Pure python implementation of convert_longlat from convertbng
cellml-specification
cellml-validation
A suite of CellML files used to test validation methods
cellml1to2
Attempt at using XSLT to translate CellML 1.0 and 1.1 documents into the proposed CellML 2.0 format.
chi
Chi is an open source Python package which is designed for dose response modelling.
making-figures
Tips on figure making, plus help with Inkscape and Matplotlib.
wevis
Network module for Where's Ben Nevis
examples
Notebooks and example code showing how Myokit can be used.
myokit
Source code, issues, and discussions for Myokit: A tool for cardiac electrophysiology modelling and simulation
MichaelClerx's Repositories
MichaelClerx/making-figures
Tips on figure making, plus help with Inkscape and Matplotlib.
MichaelClerx/cellml-validation
A suite of CellML files used to test validation methods
MichaelClerx/wevis
Network module for Where's Ben Nevis
MichaelClerx/Akwaboah-hipsc-model
This repository contains code and supplementary material for our computational hiPSC-CM model.
MichaelClerx/bnglonlat
Pure python implementation of convert_longlat from convertbng
MichaelClerx/cellml-specification
MichaelClerx/cellml1to2
Attempt at using XSLT to translate CellML 1.0 and 1.1 documents into the proposed CellML 2.0 format.
MichaelClerx/chi
Chi is an open source Python package which is designed for dose response modelling.
MichaelClerx/driving-term
Driving terms for ionic current models
MichaelClerx/eisner-example
Messing around with Jupyter and an example by Eisner et al.
MichaelClerx/FittingAlgorithm
The fitting algorithm of Beattie et al, modified to allow fitting to multiple protocols.
MichaelClerx/fitzlet
Fitzlet: Simplified 2d electrophysiology simulator for android
MichaelClerx/importance-of-binding-mechanism
Source code and data used in the article "Importance of modelling hERG binding in predicting drug-induced action potential prolongations for drug safety assessment" (Farm et al. Frontiers in Pharmacology, 2023)
MichaelClerx/ina-midpoints
Data and figures for "Variability in reported midpoints of (in)activation for cardiac INa"
MichaelClerx/iPSC-leak-artifact
Simulations and figures for manuscript showing descriptive ability of iPSC-CM+artifact models
MichaelClerx/libcellml
Repository for libCellML development: Michael's fork
MichaelClerx/mutations-scn5a
Code for Clerx, Heijman, Collins, Volders (2018) Predicting changes to INa from missense mutations in human SCN5A
MichaelClerx/optimiser-overview
Incomplete overview of optimisation methods
MichaelClerx/pycma
Fork of the Python CMA-ES repo
MichaelClerx/pystan
PyStan, a Python interface to Stan, a platform for statistical modeling. Documentation: https://pystan.readthedocs.io
MichaelClerx/python-c-example
Example code of a C python extension