MichaelClerx

MichaelClerx's Stars

• stevengj/nlopt

  library for nonlinear optimization, wrapping many algorithms for global and local, constrained or unconstrained, optimization

  Language:C1.9k74365599

• libprima/prima

  PRIMA is a package for solving general nonlinear optimization problems without using derivatives. It provides the reference implementation for Powell's derivative-free optimization methods, i.e., COBYLA, UOBYQA, NEWUOA, BOBYQA, and LINCOA. PRIMA means Reference Implementation for Powell's methods with Modernization and Amelioration, P for Powell.

  Language:Fortran32748443

• pints-team/pints

  Probabilistic Inference on Noisy Time Series

  Language:Python230131k34

• MichaelClerx/making-figures

  Tips on figure making, plus help with Inkscape and Matplotlib.

  Language:Jupyter Notebook43181

• myokit/myokit

  Source code, issues, and discussions for Myokit: A tool for cardiac electrophysiology modelling and simulation

  Language:Python3776615

• BondGraphTools/BondGraphTools

  A Multi-Physics Systems Modelling Library

  Language:Python3539617

• campagnola/heka_reader

  Python module for reading HEKA PatchMaster data files

  Language:Python135510

• cudmore/SanPy

  SanPy is software for whole-cell current clamp analysis.

  Language:Python13375

• martinjrobins/diffeq-js

  Javascript library for defining and solving DAE equations efficiently using WebAssembly

  Language:TypeScript11231

• swharden/LJPcalc

  Liquid Junction Potential Calculator

  Language:C#94251

• DavAug/chi

  Chi is an open source Python package which is designed for PKPD modelling and model-informed precision dosing (MIPD).

  Language:Python821734

• myokit/model-list

  A list of (detailed, non-stochastic) action potential models, with links to papers, source code, CellML and Myokit implementations

  8110

• ComputationalPhysiology/ap_features

  Package to compute features of traces from action potential models

  Language:Python75123

• myokit/examples

  Notebooks and example code showing how Myokit can be used.

  Language:Jupyter Notebook6590

• CardiacModelling/fitting-notebooks

  Examples of parameter estimation in cardiac cell electrophysiology using Myokit and PINTS.

  Language:Jupyter Notebook44346

• CardiacModelling/BenNevis

  "Where is Ben Nevis" presents the landscape of Great Britain as a testbed for optimisation and sampling methods.

  Language:Python33451

• CardiacModelling/pcpostprocess

  A Python package to run Lei et al. (2019) quality control on patch-clamp time-series data.

  Language:Python32210

• CardiacModelling/syncropatch_export

  A Python package to export SynroPatch 384 data.

  Language:Python3150

• Christini-Lab/iPSC-leak-artifact

  Simulations and figures for manuscript showing descriptive ability of iPSC-CM+artifact models

  Language:Jupyter Notebook3401

• Christini-Lab/vc-optimization-cardiotoxicity

  Includes all the modeling, genetic algorithm simulations, and data analysis for the Christini Lab paper on drug cardiotoxicity screening with an optimized VC protocol

  Language:Python3201

• martinjrobins/diffsl

  Language:Rust3381

• MichaelClerx/cellml-validation

  A suite of CellML files used to test validation methods

  Language:Python31741

• AmruteLab/PyChelator

  PyChelator performs metal chelator calculations taking into account pH, temperature, and ionic strength

  Language:Jupyter Notebook20

• CardiacModelling/nav-artefact-model

  Code for reproducing "Resolving artefacts in voltage-clamp experiments with computational modelling: an application to fast sodium current recordings"

  Language:Jupyter Notebook130

• Christini-Lab/artifact_project

  Contains all simulation and analysis related to my (Alex) artifact project

  Language:Python1200

• easy-electrophysiology/load-heka-python-data

  Test data for the load-heka-python module

  10

• HeijmanLab/IonChannelTraffickingModel

  Language:Python1001

• InSilicoHeart/MatCardiacMLab

  Matlab toolbox to Simulate Electrophysiologycal Cardiac Models described in CellML files

  Language:MATLAB1240

• MichaelClerx/wevis

  Network module for Where's Ben Nevis

  Language:Python1210

• myokit/models

  Curated Myokit implementations of (mostly cardiac) models

  Language:Python1100