MicheleBortol
Single-cell Open Lab, German Cancer Research Center (DKFZ), Heidelberg, GermanyHeidelberg
MicheleBortol's Stars
awesomedata/awesome-public-datasets
A topic-centric list of HQ open datasets.
cxli233/FriendsDontLetFriends
Friends don't let friends make certain types of data visualization - What are they and why are they bad.
sakai135/wsl-vpnkit
Provides network connectivity to WSL 2 when blocked by VPN
ilastik/ilastik
ilastik-shell, applets, and workflows to string them together.
ome/ome-zarr-py
Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
glencoesoftware/bioformats2raw
Bio-Formats image file format to raw format converter
tlambert03/ome-types
native Python dataclasses for the OME data model
glencoesoftware/raw2ometiff
Raw format to OME-TIFF converter
ciccalab/SIMPLI
SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
dockersamples/awesome-compose
Awesome Docker Compose samples
ome/omero-iviewer
An OMERO.web app allowing to view images
fmicompbio/ez_zarr
GIve easy, high-level access to ome-zarr fileset
nfdi4plants/ARC-specification
nf-core/molkart
A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)
NFDI4BIOIMAGE/training
sukunis/OMERO.openlink
An OMERO.web app for sharing data and prepare data for web download
kasparmartens/shared-private-multimodalVAE
PyTorch implementation for shared-private Multimodal Variational Autoencoders
sebgoti/napari-spacetx-explorer
A simple plugin for an interactive visualization of spatial omics data.
DKFZ-ODCF/ldap-summary
Simple shellscripts to make interaction with LDAP/AD/ldapsearch easier
German-BioImaging/omero_fileserver-import
Script to import images from fileserver mounted on an OMERO server
cmohl2013/omero-arc
Library to export OMERO projects to ARC repositories
WU-BIMAC/W-IDM_OmeroImporterPy
This repository contains software that was developed to add metadata annotations to bioimage data before importing it into OMERO
ome/cookiecutter-omero-webapp
Cookiecutter to create OMERO.web apps
ome/omero-web-zarr
Implementation of OME-Zarr API with an omero-web app
saeyslab/VIB_Hackathon_June_2024
Code repository for the VIB Hackathon June 2024 on spatial omics. More info: https://hackmd.io/@berombau/BJetSxw8T
cai-hhu/omero-HCS_notebooks
Utility notebook to interact with HCS data on OMERO
German-BioImaging/fiji_omero_workflows
ImageJ/Fiji macros using OMERO
glencoesoftware/zeroc-ice-py-linux-x86_64
Builds ZeroC Ice Python manylinux_2_28 wheel packages for Linux x86_64.
will-moore/zarr-python
An implementation of chunked, compressed, N-dimensional arrays for Python.
WU-BIMAC/W-IDM_OmeroImporterExcelHelperPy
This repository contains Python software that was created to explore file system directories and automatically collect the names of image data files to be annotated with experimental and sample preparation metadata and imported into OMERO.